Low-molecular-weight plasmid of Salmonella enterica serovar Enteritidis codes for retron reverse transcriptase and influences phage resistance
Jazyk angličtina Země Spojené státy americké Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
11292805
PubMed Central
PMC99502
DOI
10.1128/jb.183.9.2852-2858.2001
Knihovny.cz E-zdroje
- MeSH
- bakteriofágy MeSH
- DNA bakterií biosyntéza genetika MeSH
- elektroforéza v polyakrylamidovém gelu MeSH
- hybridizace nukleových kyselin MeSH
- inzerční mutageneze MeSH
- jednovláknová DNA biosyntéza genetika MeSH
- molekulární sekvence - údaje MeSH
- molekulová hmotnost MeSH
- otevřené čtecí rámce MeSH
- plazmidy chemie genetika MeSH
- reverzní transkriptasa genetika MeSH
- Salmonella enterica enzymologie genetika virologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- DNA bakterií MeSH
- jednovláknová DNA MeSH
- reverzní transkriptasa MeSH
Retron reverse transcriptases are unusual procaryotic enzymes capable of synthesis of low-molecular-weight DNA by reverse transcription. All of the so-far-described DNA species synthesized by retron reverse transcriptases have been identified as multicopy single-stranded DNA. We have shown that Salmonella enterica serovar Enteritidis is also capable of synthesis of the low-molecular-weight DNA by retron reverse transcriptase. Surprisingly, Salmonella serovar Enteritidis-produced low-molecular-weight DNA was shown to be a double-stranded DNA with single-stranded overhangs (sdsDNA). The sdsDNA was 72 nucleotides (nt) long, of which a 38-nt sequence was formed by double-stranded DNA with 19- and 15-nt single-stranded overhangs, respectively. Three open reading frames (ORFs), encoded by the 4,053-bp plasmid, were essential for the production of sdsDNA. These included an ORF with an unknown function, the retron reverse transcriptase, and an ORF encoding the cold shock protein homologue. This plasmid was also able to confer phage resistance onto the host cell by a mechanism which was independent of sdsDNA synthesis.
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Akada R. Quick-check method to test the size of Escherichia coli plasmids. BioTechniques. 1994;17:58. PubMed
Bhattacharjee M K, Meyer R J. Specific binding of MobA, a plasmid-encoded protein involved in the initiation and termination of conjugal DNA transfer, to single-stranded oriT DNA. Nucleic Acids Res. 1993;21:4563–4568. PubMed PMC
Birnboim H C, Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 1979;7:1513–1523. PubMed PMC
Bridges B A. Starvation-associated mutation in E. coli strains with and without reverse transcriptase. Mutat Res. 1995;347:13–15. PubMed
Brown D J, Threlfall E J, Hampton M D, Rowe B. Molecular characterization of plasmids in Salmonella enteritidis phage types. Epidemiol Infect. 1993;110:209–216. PubMed PMC
Buisan M, Rodriguez-Pena J M, Rotger R. Restriction map of the Salmonella enteritidis virulence plasmid and its homology with the plasmid of Salmonella typhimurium. Microb Pathog. 1994;16:165–169. PubMed
Dhundale A, Lampson B, Furuichi T, Inouye M, Inouye S. Structure of msDNA from Myxococcus xanthus: evidence for a long, self-annealing RNA precursor for the covalently linked, branched RNA. Cell. 1987;51:1105–1112. PubMed
Dhundale A R, Furuichi T, Inouye S, Inouye M. Distribution of multicopy single-stranded DNA among myxobacteria and related species. J Bacteriol. 1985;164:914–917. PubMed PMC
Dodd I B, Egan J B. The Escherichia coli retrons Ec67 and Ec86 replace DNA between the cos site and a transcription terminator of a 186-related prophage. Virology. 1996;219:115–124. PubMed
Dorn C R, Silapanuntakul R, Angrick E J, Shipman L D. Plasmid analysis of Salmonella enteritidis isolated from human gastroenteritis cases and from epidemiologically associated poultry flocks. Epidemiol Infect. 1993;111:239–243. PubMed PMC
Gado I, Laszlo V G, Nagy B, Milch H, Drin I, Awad-Masalmeh M, Horvath J. Phage restriction and the presence of small plasmids in Salmonella enteritidis. Int J Med Microbiol. 1998;287:509–519. PubMed
Halavatkar H, Barrow P A. The role of a 54-kb plasmid in the virulence of strains of Salmonella enteritidis of phage type 4 for chickens and mice. J Med Microbiol. 1993;38:171–176. PubMed
Herzer P J. Starvation-induced expression of retron-Ec107 and the role of ppGpp in multicopy single-stranded DNA production. J Bacteriol. 1996;178:4438–4444. PubMed PMC
Herzer P J, Inouye S, Inouye M, Whittam T S. Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J Bacteriol. 1990;172:6175–6181. PubMed PMC
Hsu M Y, Eagle S G, Inouye M, Inouye S. Cell-free synthesis of the branched RNA-linked msDNA from retron-Ec67 of Escherichia coli. J Biol Chem. 1992;267:13823–13829. PubMed
Ibanez M, Rotger R. Characterization of a small cryptic plasmid from Salmonella enteritidis that affects the growth of Escherichia coli. FEMS Microbiol Lett. 1993;109:225–230. PubMed
Inouye S, Sunshine M G, Six E W, Inouye M. Retronphage phi R73: an E. coli phage that contains a retroelement and integrates into a tRNA gene. Science. 1991;252:969–971. PubMed
Lampson B C, Inouye M, Inouye S. Reverse transcriptase with concomitant ribonuclease H activity in the cell-free synthesis of branched RNA-linked msDNA of Myxococcus xanthus. Cell. 1989;56:701–707. PubMed
Lampson B C, Inouye M, Inouye S. Survey of multicopy single-stranded DNAs and reverse transcriptase genes among natural isolates of Myxococcus xanthus. J Bacteriol. 1991;173:5363–5370. PubMed PMC
Lampson B C, Rice S A. Repetitive sequences found in the chromosome of the myxobacterium Nannocystis exedens are similar to msDNA: a possible retrotransposition event in bacteria. Mol Microbiol. 1997;23:813–823. PubMed
Lampson B C, Sun J, Hsu M Y, Vallejo-Ramirez J, Inouye S, Inouye M. Reverse transcriptase in a clinical strain of Escherichia coli: production of branched RNA-linked msDNA. Science. 1989;243:1033–1038. PubMed
Lampson B C, Viswanathan M, Inouye M, Inouye S. Reverse transcriptase from Escherichia coli exists as a complex with msDNA and is able to synthesize double-stranded DNA. J Biol Chem. 1990;265:8490–8496. PubMed
Lim D, Maas W K. Reverse transcriptase-dependent synthesis of a covalently linked, branched DNA-RNA compound in E. coli B. Cell. 1989;56:891–904. PubMed
Lima T M, Lim D. A novel retron that produces RNA-less msDNA in Escherichia coli using reverse transcriptase. Plasmid. 1997;38:25–33. PubMed
Maas W K, Wang C, Lima T, Zubay G, Lim D. Multicopy single-stranded DNAs with mismatched base pairs are mutagenic in Escherichia coli. Mol Microbiol. 1994;14:437–441. PubMed
Millemann Y, Lesage M C, Chaslus-Dancla E, Lafont J P. Value of plasmid profiling, ribotyping, and detection of IS200 for tracing avian isolates of Salmonella typhimurium and S. enteritidis. J Clin Microbiol. 1995;33:173–179. PubMed PMC
Rice S A, Bieber J, Chun J Y, Stacey G, Lampson B C. Diversity of retron elements in a population of rhizobia and other gram-negative bacteria. J Bacteriol. 1993;175:4250–4254. PubMed PMC
Rice S A, Lampson B C. Bacterial reverse transcriptase and msDNA. Virus Genes. 1996;11:95–104. PubMed
Rodriguez-Pena J M, Alvarez I, Ibanez M, Rotger R. Homologous regions of the Salmonella enteritidis virulence plasmid and the chromosome of Salmonella typhi encode thiol: disulphide oxidoreductases belonging to the DsbA thioredoxin family. Microbiology. 1997;143:1405–1413. PubMed
Rodriguez-Pena J M, Buisan M, Ibanez M, Rotger R. Genetic map of the virulence plasmid of Salmonella enteritidis and nucleotide sequence of its replicons. Gene. 1997;188:53–61. PubMed
Rychlik I, Karpiskova R, Faldynova M, Sisak F. Computer-assisted restriction endonuclease analysis of plasmid DNA in field strains of Salmonella enteritidis. Can J Microbiol. 1998;44:1183–1185. PubMed
Rychlik I, Svestkova A, Karpiskova R. Subdivision of Salmonella enterica serovar Enteritidis phage-types PT21 and PT14b by plasmid profiling. Vet Microbiol. 2000;74:217–225. PubMed
Stubbs A D, Hickman-Brenner F W, Cameron D N, Farmer J J. Differentiation of Salmonella enteritidis phage type 8 strains—evaluation of three additional phage typing systems, plasmid profiles, antibiotic susceptibility patterns, and biotyping. J Clin Microbiol. 1994;32:199–201. PubMed PMC
Tassios P T, Markogiannakis A, Vatopoulos A C, Katsanikou E, Velonakis E N, Kourea-Kremastinou J, Legakis N J. Molecular epidemiology of antibiotic resistance of Salmonella enteritidis during a 7-year period in Greece. J Clin Microbiol. 1997;35:1316–1321. PubMed PMC
Temin H M. Reverse transcriptases. Retrons in bacteria. Nature. 1989;339:254–255. PubMed
Vatopoulos A C, Mainas E, Balis E, Threlfall E J, Kanelopoulou M, Kalapothaki V, Malamoulada H, Legakis N J. Molecular epidemiology of ampicillin-resistant clinical isolates of Salmonella enteritidis. J Clin Microbiol. 1994;32:1322–1325. PubMed PMC
Viswanathan M, Inouye M, Inouye S. Myxococcus xanthus msDNA. Mx162 exists as a complex with proteins. J Biol Chem. 1989;264:13665–13671. PubMed
Ward L R, de Sa J D H, Rowe B. A phage-typing scheme for Salmonella enteritidis. Epidemiol Infect. 1987;99:291–294. PubMed PMC
Woodward M J, Allen-Vercoe E, Redstone J S. Distribution, gene sequence and expression in vivo of the plasmid encoded fimbrial antigen of Salmonella serotype Enteritidis. Epidemiol Infect. 1996;117:17–28. PubMed PMC
Yee T, Furuichi T, Inouye S, Inouye M. Multicopy single-stranded DNA isolated from a gram-negative bacterium, Myxococcus xanthus. Cell. 1984;38:203–209. PubMed
Retron Se72 utilizes a unique strategy of the self-priming initiation of reverse transcription
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