Program MULDER -- a tool for extracting torsion angles from NMR data
Jazyk angličtina Země Nizozemsko Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
12522298
DOI
10.1023/a:1021656808607
PII: 5110688
Knihovny.cz E-zdroje
- MeSH
- deoxyribosa chemie MeSH
- DNA chemie MeSH
- konformace nukleové kyseliny * MeSH
- nukleární magnetická rezonance biomolekulární metody MeSH
- sekvence nukleotidů MeSH
- software * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- deoxyribosa MeSH
- DNA MeSH
MULDER (Mostly UniversaL Dihedral angle ExtractoR) is a program for extraction of torsion angle information from NMR data. Currently, it can analyze two types of input data: The torsion angle data, where several (3)J-coupling constants and/or interatomic distances are combined in order to reduce the torsion angle ambiguity arising from solving the isolated Karplus (or distance) equation, and the sugar pucker data, where the dynamics of five-membered sugar rings is evaluated by postprocessing the results calculated from (3)J((HH)) coupling constants by program PSEUROT. Program MULDER can be used either as an alternative to r-MD programs in situations where only specific structural features are studied, or as a preparatory tool in connection with full r-MD structure calculation for extraction of unambiguous torsion angle restraints.
Zobrazit více v PubMed
J Mol Biol. 1997 Oct 17;273(1):283-98 PubMed
J Biomol NMR. 1995 Nov;6(3):277-93 PubMed
J Mol Biol. 2000 Apr 7;297(4):907-22 PubMed
J Mol Biol. 2001 Mar 23;307(2):513-24 PubMed
J Biomol NMR. 1998 Nov;12(4):543-8 PubMed
Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PubMed
J Magn Reson B. 1995 Jul;108(1):31-43 PubMed
J Biomol NMR. 2002 Sep;24(1):1-14 PubMed
J Biomol NMR. 1999 Nov;15(3):251-64 PubMed
J Am Chem Soc. 1972 Nov 15;94(23):8205-12 PubMed
Pyrrolidine nucleotide analogs with a tunable conformation