Inhibitor binding at the protein interface in crystals of a HIV-1 protease complex
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
15502300
DOI
10.1107/s0907444904021572
PII: S0907444904021572
Knihovny.cz E-zdroje
- MeSH
- HIV-proteasa chemie metabolismus MeSH
- inhibitory HIV-proteasy chemie metabolismus MeSH
- konformace proteinů MeSH
- krystalografie rentgenová MeSH
- ligandy MeSH
- molekulární modely MeSH
- senzitivita a specificita MeSH
- vazebná místa MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- HIV-proteasa MeSH
- inhibitory HIV-proteasy MeSH
- ligandy MeSH
Depending on the excess of ligand used for complex formation, the HIV-1 protease complexed with a novel phenylnorstatine inhibitor forms crystals of either hexagonal (P6(1)) or orthorhombic (P2(1)2(1)2(1)) symmetry. The orthorhombic form shows an unusual complexity of crystal packing: in addition to one inhibitor molecule that is bound to the enzyme active site, the second inhibitor molecule is bound as an outer ligand at the protein interface. Binding of the outer ligand apparently increases the crystal-quality parameters so that the diffraction data allow solution of the structure of the complex at 1.03 A, the best resolution reported to date. The outer ligand interacts with all four surrounding HIV-1 protease molecules and has a bent conformation owing to its accommodation in the intermolecular space. The parameters of the solved structures of the orthorhombic and hexagonal forms are compared.
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