Rapid detection and identification of mucormycetes from culture and tissue samples by use of high-resolution melt analysis
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
20592150
PubMed Central
PMC2937726
DOI
10.1128/jcm.01109-10
PII: JCM.01109-10
Knihovny.cz E-zdroje
- MeSH
- DNA fungální chemie genetika MeSH
- lidé MeSH
- molekulární sekvence - údaje MeSH
- Mucorales klasifikace genetika izolace a purifikace MeSH
- mukormykóza diagnóza MeSH
- mykologie metody MeSH
- polymerázová řetězová reakce metody MeSH
- sekvenční analýza DNA MeSH
- tranzitní teplota MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- DNA fungální MeSH
We present a method for rapid and simple detection of clinically relevant mucormycetes of the Mucorales order in cultures and clinical samples. This seminested real-time PCR uses mucormycete-specific primers and is followed by species identification using high-resolution melt (HRM) analysis. The method is highly suitable for routine clinical diagnostics.
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Bialek, R., F. Konrad, J. Kern, C. Aepinus, L. Cecenas, G. M. Gonzalez, G. Just-Nubling, B. Willinger, E. Presterl, C. Lass-Florl, and V. Rickerts. 2005. PCR based identification and discrimination of agents of mucormycosis and aspergillosis in paraffin wax embedded tissue. J. Clin. Pathol. 58:1180-1184. PubMed PMC
Chayakulkeeree, M., M. A. Ghannoum, and J. R. Perfect. 2006. Zygomycosis: the re-emerging fungal infection. Eur. J. Clin. Microbiol. Infect. Dis. 25:215-229. PubMed
Chiu, R. W. K., M. F. Murphy, C. Fidler, B. C. Y. Zee, J. S. Wainscoat, and Y. M. D. Lo. 2001. Determination of RhD zygosity: comparison of a double amplification refractory mutation system approach and a multiplex real-time quantitative PCR approach. Clin. Chem. 47:667-672. PubMed
Erali, M., K. V. Voelkerding, and C. T. Wittwer. 2008. High resolution melting applications for clinical laboratory medicine. Exp. Mol. Pathol. 85:50-58. PubMed PMC
Hata, D. J., S. P. Buckwalter, B. S. Pritt, G. D. Roberts, and N. L. Wengenack. 2008. Real-time PCR method for detection of zygomycetes. J. Clin. Microbiol. 46:2353-2358. PubMed PMC
Ibrahim, A. S., J. C. Bowman, V. Avanessian, K. Brown, B. Spellberg, J. E. Edwards, Jr., and C. M. Douglas. 2005. Caspofungin inhibits Rhizopus oryzae 1,3-β-d-glucan synthase, lowers burden in brain measured by quantitative PCR, and improves survival at a low but not a high dose during murine disseminated zygomycosis. Antimicrob. Agents Chemother. 49:721-727. PubMed PMC
Kasai, M., S. M. Harrington, A. Francesconi, V. Petraitis, R. Petraitiene, M. G. Beveridge, T. Knudsen, J. Milanovich, M. P. Cotton, J. Hughes, R. L. Schaufele, T. Sein, J. Bacher, P. R. Murray, D. P. Kontoyiannis, and T. J. Walsh. 2008. Detection of a molecular biomarker for zygomycetes by quantitative PCR assays of plasma, bronchoalveolar lavage, and lung tissue in a rabbit model of experimental pulmonary zygomycosis. J. Clin. Microbiol. 46:3690-3702. PubMed PMC
Lehmann, U., and H. Kreipe. 2001. Real-time PCR analysis of DNA and RNA extracted from formalin-fixed and paraffin-embedded biopsies. Methods 25:409-418. PubMed
Malani, A. N., and C. A. Kauffman. 2007. Changing epidemiology of rare mould infections: implications for therapy. Drugs 67:1803-1812. PubMed
Nagao, K., T. Ota, A. Tanikawa, Y. Takae, T. Mori, S. Udagawa, and T. Nishikawa. 2005. Genetic identification and detection of human pathogenic Rhizopus species, a major mucormycosis agent, by multiplex PCR based on internal transcribed spacer region of rRNA gene. J. Dermatol. Sci. 39:23-31. PubMed
Pfaller, M. A., P. G. Pappas, and J. R. Wingard. 2006. Invasive fungal pathogens: current epidemiological trends. Clin. Infect. Dis. 43:S3-S14.
Reed, G. H., J. O. Kent, and C. T. Wittwer. 2007. High-resolution DNA melting analysis for simple and efficient molecular diagnostics. Pharmacogenomics 8:597-608. PubMed
Ribes, J. A., C. L. Vanover-Sams, and D. J. Baker. 2000. Zygomycetes in human disease. Clin. Microbiol. Rev. 13:236-301. PubMed PMC
Rickerts, V., G. Just-Nubling, F. Konrad, J. Kern, E. Lambrecht, A. Bohme, V. Jacobi, and R. Bialek. 2006. Diagnosis of invasive aspergillosis and mucormycosis in immunocompromised patients by seminested PCR assay of tissue samples. Eur. J. Clin. Microbiol. Infect. Dis. 25:8-13. PubMed
Rickerts, V., S. Mousset, E. Lambrecht, K. Tintelnot, R. Schwerdtfeger, E. Presterl, V. Jacobi, G. Just-Nubling, and R. Bialek. 2007. Comparison of histopathological analysis, culture, and polymerase chain reaction assays to detect invasive mold infections from biopsy specimens. Clin. Infect. Dis. 44:1078-1083. PubMed
Roden, M. M., T. E. Zaoutis, W. L. Buchanan, T. A. Knudsen, T. A. Sarkisova, R. L. Schaufele, M. Sein, T. Sein, C. C. Chiou, J. H. Chu, D. P. Kontoyiannis, and T. J. Walsh. 2005. Epidemiology and outcome of zygomycosis: a review of 929 reported cases. Clin. Infect. Dis. 41:634-653. PubMed
Spiess, B., W. Seifarth, M. Hummel, O. Frank, A. Fabarius, C. Zheng, H. Morz, R. Hehlmann, and D. Buchheidt. 2007. DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients. J. Clin. Microbiol. 45:3743-3753. PubMed PMC
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