Huge Overlap of Individual TCR Beta Repertoires
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
24400005
PubMed Central
PMC3872297
DOI
10.3389/fimmu.2013.00466
Knihovny.cz E-zdroje
- Klíčová slova
- NGS data analysis, TCR beta, TCR repertoire, adaptive immunity, overlap,
- Publikační typ
- časopisecké články MeSH
A commentary on Mother and child T cell receptor repertoires: deep profiling study by Putintseva EV, Britanova OV, Staroverov DB, Merzlyak EM, Turchaninova MA, Shugay M, Bolotin DA, Pogorelyy MV, Mamedov IZ, Bobrynina V, Maschan M, Lebedev YB and Chudakov DM. Front Immunol (2013) 4:463. doi: 10.3389/fimmu.2013.00463 PubMed
Zobrazit více v PubMed
Robins HS, Srivastava SK, Campregher PV, Turtle CJ, Andriesen J, Riddell SR, et al. Overlap and effective size of the human CD8+ T cell receptor repertoire. Sci Transl Med (2010) 2:47ra64.10.1126/scitranslmed.3001442 PubMed DOI PMC
Venturi V, Quigley MF, Greenaway HY, Ng PC, Ende ZS, McIntosh T, et al. A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing. J Immunol (2011) 186:4285–9410.4049/jimmunol.1003898 PubMed DOI
Li H, Ye C, Ji G, Wu X, Xiang Z, Li Y, et al. Recombinatorial biases and convergent recombination determine interindividual TCRbeta sharing in murine thymocytes. J Immunol (2012) 189:2404–1310.4049/jimmunol.1102087 PubMed DOI
Putintseva EV, Britanova OV, Staroverov DB, Merzlyak EM, Turchaninova MA, Shugay M, et al. Mother and child T cell receptor repertoires: deep profiling study. Front Immunol (2013) 4:463.10.3389/fimmu.2013.00463 PubMed DOI PMC
Robins HS, Campregher PV, Srivastava SK, Wacher A, Turtle CJ, Kahsai O, et al. Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. Blood (2009) 114:4099–10710.1182/blood-2009-04-217604 PubMed DOI PMC
Davis MM, Bjorkman PJ. T-cell antigen receptor genes and T-cell recognition. Nature (1988) 334:395–40210.1038/334395a0 PubMed DOI
Bolotin DA, Shugay M, Mamedov IZ, Putintseva EV, Turchaninova MA, Zvyagin IV, et al. MiTCR: software for T-cell receptor sequencing data analysis. Nat Methods (2013) 10(9):813–410.1038/nmeth.2555 PubMed DOI
Eren MI, Chao A, Hwang WH, Colwell RK. Estimating the richness of a population when the maximum number of classes is fixed: a nonparametric solution to an archaeological problem. PLoS One (2012) 7:e34179.10.1371/journal.pone.0034179 PubMed DOI PMC
Venturi V, Price DA, Douek DC, Davenport MP. The molecular basis for public T-cell responses? Nat Rev Immunol (2008) 8:231–810.1038/nri2260 PubMed DOI
Turner SJ, Doherty PC, McCluskey J, Rossjohn J. Structural determinants of T-cell receptor bias in immunity. Nat Rev Immunol (2006) 6:883–9410.1038/nri1977 PubMed DOI
Gras S, Kjer-Nielsen L, Burrows SR, McCluskey J, Rossjohn J. T-cell receptor bias and immunity. Curr Opin Immunol (2008) 20:119–2510.1016/j.coi.2007.12.001 PubMed DOI
Quigley MF, Greenaway HY, Venturi V, Lindsay R, Quinn KM, Seder RA, et al. Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire. Proc Natl Acad Sci U S A (2010) 107:19414–910.1073/pnas.1010586107 PubMed DOI PMC
Distinct organization of adaptive immunity in the long-lived rodent Spalax galili
Measuring Intratumoral Heterogeneity of Immune Repertoires
Exploring the pre-immune landscape of antigen-specific T cells
VDJviz: a versatile browser for immunogenomics data
VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires