Optimization of the crystallizability of a single-chain antibody fragment
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
25484230
PubMed Central
PMC4259244
DOI
10.1107/s2053230x1402247x
PII: S2053230X1402247X
Knihovny.cz E-zdroje
- Klíčová slova
- Thermofluor assay, crystallizability optimization, crystallization, differential scanning fluorimetry, oligomerization, single-chain antibody fragment,
- MeSH
- gelová chromatografie MeSH
- jednořetězcové protilátky chemie MeSH
- krystalizace * MeSH
- lidé MeSH
- molekulární sekvence - údaje MeSH
- sekvence aminokyselin MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- jednořetězcové protilátky MeSH
Single-chain variable antibody fragments (scFvs) are molecules with immense therapeutic and diagnostic potential. Knowledge of their three-dimensional structure is important for understanding their antigen-binding mode as well as for protein-engineering approaches such as antibody humanization. A major obstacle to the crystallization of single-chain variable antibody fragments is their relatively poor homogeneity caused by spontaneous oligomerization. A new approach to optimization of the crystallizability of single-chain variable antibody fragments is demonstrated using a representative single-chain variable fragment derived from the anti-CD3 antibody MEM-57. A Thermofluor-based assay was utilized to screen for optimal conditions for antibody-fragment stability and homogeneity. Such an optimization of the protein storage buffer led to a significantly improved ability of the scFv MEM-57 to yield crystals.
Zobrazit více v PubMed
Arndt, K. M., Müller, K. M. & Plückthun, A. (1998). Biochemistry, 37, 12918–12926. PubMed
Atwell, J. L., Breheney, K. A., Lawrence, L. J., McCoy, A. J., Kortt, A. A. & Hudson, P. J. (1999). Protein Eng. 12, 597–604. PubMed
Bayly, A. M., Kortt, A. A., Hudson, P. J. & Power, B. E. (2002). J. Immunol. Methods, 262, 217–227. PubMed
Bird, R. E., Hardman, K. D., Jacobson, J. W., Johnson, S., Kaufman, B. M., Lee, S. M., Lee, T., Pope, S. H., Riordan, G. S. & Whitlow, M. (1988). Science, 242, 423–426. PubMed
Carmichael, J. A., Power, B. E., Garrett, T. P. J., Yazaki, P. J., Shively, J. E., Raubischek, A. A., Wu, A. M. & Hudson, P. J. (2003). J. Mol. Biol. 326, 341–351. PubMed
Chatenoud, L. (2003). Nature Rev. Immunol. 3, 123–132. PubMed
Dale, G. E., Oefner, C. & D’Arcy, A. (2003). J. Struct. Biol. 142, 88–97. PubMed
Ericsson, U. B., Hallberg, B. M., DeTitta, G. T., Dekker, N. & Nordlund, P. (2006). Anal. Biochem. 357, 289–298. PubMed
Goldstein, G. (1987). Transplant. Proc. 19, 1–6. PubMed
Griep, R. A., van Twisk, C., Kerschbaumer, R. J., Harper, K., Torrance, L., Himmler, G., van der Wolf, J. M. & Schots, A. (1999). Protein Expr. Purif. 16, 63–69. PubMed
Hilgert, I., Horejsi, V. & Kristofova, H. (1989). Czechoslovakia Patent 253 687.
Holliger, P., Prospero, T. & Winter, G. (1993). Proc. Natl Acad. Sci. USA, 90, 6444–6448. PubMed PMC
Huston, J. S., Levinson, D., Mudgett-Hunter, M., Tai, M.-S., Novotný, J., Margolies, M. N., Ridge, R. J., Bruccoleri, R. E., Haber, E., Crea, R. & Oppermann, H. (1988). Proc. Natl Acad. Sci. USA, 85, 5879–5883. PubMed PMC
Jäger, M. & Plückthun, A. (1999). FEBS Lett. 462, 307–312. PubMed
Kabat, E. A., Wu, T. T., Perry, H. M., Gottesman, K. S. & Foeller, C. (1991). Sequences of Proteins of Immunological Interest, 5th ed. Bethesda: National Institutes of Health.
Kaprálek, F., Jecmen, P., Sedlácek, J., Fábry, M. & Zadrazil, S. (1991). Biotechnol. Bioeng. 37, 71–79. PubMed
Kipriyanov, S. M., Moldenhauer, G. & Little, M. (1997). J. Immunol. Methods, 200, 69–77. PubMed
Kortt, A. A., Lah, M., Oddie, G. W., Gruen, C. L., Burns, J. E., Pearce, L. A., Atwell, J. L., McCoy, A. J., Howlett, G. J., Metzger, D. W., Webster, R. G. & Hudson, P. J. (1997). Protein Eng. 10, 423–433. PubMed
Kortt, A. A., Malby, R. L., Caldwell, J. B., Gruen, L. C., Ivancic, N., Lawrence, M. C., Howlett, G. J., Webster, R. G., Hudson, P. J. & Colman, P. M. (1994). FEBS J. 221, 151–157. PubMed
Kung, P., Goldstein, G., Reinherz, E. L. & Schlossman, S. F. (1979). Science, 206, 347–349. PubMed
Orlandi, R., Güssow, D. H., Jones, P. T. & Winter, G. (1989). Proc. Natl Acad. Sci. USA, 86, 3833–3837. PubMed PMC
Pan, Q., Brodeur, J. F., Drbal, K. & Dave, V. P. (2006). Mol. Immunol. 43, 1741–1750. PubMed
Pantoliano, M. W., Bird, R. E., Johnson, S., Asel, E. D., Dodd, S. W., Wood, J. F. & Hardman, K. D. (1991). Biochemistry, 30, 10117–10125. PubMed
Papanastasiou, D., Mamalaki, A., Eliopoulos, E., Poulas, K., Liolitsas, C. & Tzartos, S. J. (1999). J. Neuroimmunol. 94, 182–195. PubMed
Pisackova, J., Prochazkova, K., Fabry, M. & Rezacova, P. (2013). Cryst. Growth Des. 13, 844–848.
Power, B. E., Doughty, L., Shapira, D. R., Burns, J. E., Bayly, A. M., Caine, J. M., Liu, Z., Scott, A. M., Hudson, P. J. & Kortt, A. A. (2003). Protein Sci. 12, 734–747. PubMed PMC
Procházková, K., Čermáková, K., Pachl, P., Sieglová, I., Fábry, M., Otwinowski, Z. & Řezáčová, P. (2012). Acta Cryst. D68, 176–185. PubMed PMC
Reinhard, L., Mayerhofer, H., Geerlof, A., Mueller-Dieckmann, J. & Weiss, M. S. (2013). Acta Cryst. F69, 209–214. PubMed PMC
Rezacova, P., Brynda, J., Lescar, J., Fabry, M., Horejsi, M., Sieglova, I., Sedlacek, J. & Bentley, G. A. (2005). J. Struct. Biol. 149, 332–337. PubMed
Rezacova, P., Lescar, J., Brynda, J., Fabry, M., Horejsi, M., Sedlacek, J. & Bentley, G. A. (2001). Structure, 9, 887–895. PubMed
Sgro, C. (1995). Toxicology, 105, 23–29. PubMed
Weiss, A. (1990). J. Clin. Invest. 86, 1015–1022. PubMed PMC
Whitlow, M., Filpula, D., Rollence, M. L., Feng, S. L. & Wood, J. F. (1994). Protein Eng. 7, 1017–1026. PubMed
Wolf, E., Hofmeister, R., Kufer, P., Schlereth, B. & Baeuerle, P. A. (2005). Drug Discovery Today, 10, 1237–1244. PubMed
Zdanov, A., Li, Y., Bundle, D. R., Deng, S.-J., MacKenzie, C. R., Narang, S. A., Young, N. M. & Cygler, M. (1994). Proc. Natl Acad. Sci. USA, 91, 6423–6427. PubMed PMC
Zulauf, M. & D’Arcy, A. (1992). J. Cryst. Growth, 122, 102–106.