Whole genome sequences of a free-living Pseudomonas sp. strain ML96 isolated from a freshwater Maar Lake
Jazyk angličtina Země Nizozemsko Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
26051509
DOI
10.1016/j.margen.2015.05.016
PII: S1874-7787(15)00093-8
Knihovny.cz E-zdroje
- Klíčová slova
- Core genome, Freshwater Pseudomonas, Genome sequencing, Genome size, Maar Lake, Venn diagram,
- MeSH
- fylogeneze MeSH
- genom bakteriální MeSH
- jezera mikrobiologie MeSH
- mikrobiologie vody * MeSH
- molekulární sekvence - údaje MeSH
- Pseudomonas klasifikace genetika MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Čína MeSH
A free living freshwater Pseudomonas strain ML96 was isolated from the Huguangyan Maar Lake in southern China. Genome sequencing of strain ML96 revealed a 4.7 Mb long draft genome consisting of 47 contigs with a G+C content of 64.8%. Its 16S and 23S rRNA gene sequences were 99.8% and 99.3% identical to those of its closest relative, Pseudomonas alcaligenes NBRC 14159, respectively. ML96's genome shared 73% orthologous CDS (3256/4457) with the genome of NBRC 14159. Comparative genomics analysis provide further insight into the diversity and evolution of aquatic Pseudomonas species, which may help enhance our understanding of this both environmentally and medically important group of bacteria.
Center Algatech Institute of Microbiology CAS Třeboň 37981 Czech Republic
Computational Genomics Center for Biotechnology Bielefeld University Bielefeld 33615 Germany
Citace poskytuje Crossref.org
GENBANK
JPMY00000000
