Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients
Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic
Typ dokumentu časopisecké články
PubMed
26251482
PubMed Central
PMC4541265
DOI
10.1128/genomea.00766-15
PII: 3/4/e00766-15
Knihovny.cz E-zdroje
- Publikační typ
- časopisecké články MeSH
Burkholderia contaminans belongs to the Burkholderia cepacia complex (BCC), a group of bacteria that are ubiquitous in the environment and capable of infecting the immunocompromised and people with cystic fibrosis. We report here draft genome sequences for the B. contaminans type strain LMG 23361 and an Argentinian cystic fibrosis sputum isolate.
Department of Microbiology University of Manitoba Winnipeg Canada
Facultad de Farmacia y Bioquímica Universidad de Buenos Aires Buenos Aires Argentina
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Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ, Mahenthiralingam E, Speert DP, Dowson C, Vandamme P. 2009. Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. Int J Syst Evol Microbiol 59:102–111. doi:10.1099/ijs.0.001123-0. PubMed DOI
Mahenthiralingam E, Urban TA, Goldberg JB. 2005. The multifarious, multireplicon Burkholderia cepacia complex. Nat Rev Microbiol 3:144–156. doi:10.1038/nrmicro1085. PubMed DOI
Vandamme P, Dawyndt P. 2011. Classification and identification of the Burkholderia cepacia complex: past, present and future. Syst Appl Microbiol 34:87–95. doi:10.1016/j.syapm.2010.10.002. PubMed DOI
Drevinek P, Mahenthiralingam E. 2010. Burkholderia cenocepacia in cystic fibrosis: epidemiology and molecular mechanisms of virulence. Clin Microbiol Infect 16:821–830. doi:10.1111/j.1469-0691.2010.03237.x. PubMed DOI
Martina P, Bettiol M, Vescina C, Montanaro P, Mannino MC, Prieto CI, Vay C, Naumann D, Schmitt J, Yantorno O, Lagares A, Bosch A. 2013. Genetic diversity of Burkholderia contaminans isolates from cystic fibrosis patients in Argentina. J Clin Microbiol 51:339–344. doi:10.1128/JCM.02500-12. PubMed DOI PMC
Coutinho CP, Barreto C, Pereira L, Lito L, Melo Cristino J, Sá-Correia I.. 22 May 2015. Incidence of Burkholderia contaminans at a cystic fibrosis center with an unusually high representation of Burkholderia cepacia during 15 years of epidemiological surveillance. J Med Microbiol. doi:10.1099/jmm.0.000094. PubMed DOI
Medina-Pascual MJ, Valdezate S, Carrasco G, Villalón P, Garrido N, Saéz-Nieto JA. 2015. Increase in isolation of Burkholderia contaminans from Spanish patients with cystic fibrosis. Clin Microbiol Infect 21:150–156. doi:10.1016/j.cmi.2014.07.014. PubMed DOI
Mahenthiralingam E, Baldwin A, Drevinek P, Vanlaere E, Vandamme P, LiPuma JJ, Dowson CG. 2006. Multilocus sequence typing breathes life into a microbial metagenome. PLoS One 1:e17. doi:10.1371/journal.pone.0000017. PubMed DOI PMC
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66–74. doi:10.1126/science.1093857. PubMed DOI
Martin M, Christiansen B, Caspari G, Hogardt M, von Thomsen AJ, Ott E, Mattner F. 2011. Hospital-wide outbreak of Burkholderia contaminans caused by prefabricated moist washcloths. J Hosp Infect 77:267–270. doi:10.1016/j.jhin.2010.10.004. PubMed DOI
Moehring RW, Lewis SS, Isaacs PJ, Schell WA, Thomann WR, Althaus MM, Hazen KC, Dicks KV, Lipuma JJ, Chen LF, Sexton DJ. 2014. Outbreak of bacteremia due to Burkholderia contaminans linked to intravenous fentanyl from an institutional compounding pharmacy. JAMA Intern Med 174:606–612. doi:10.1001/jamainternmed.2013.13768. PubMed DOI
Torbeck L, Raccasi D, Guilfoyle DE, Friedman RL, Hussong D. 2011. Burkholderia cepacia: this decision is overdue. PDA J Pharm Sci Technol 65:535–543. doi:10.5731/pdajpst.2011.00793. PubMed DOI
Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
Chin C, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563–569. doi:10.1038/nmeth.2474. PubMed DOI
Ussery DW, Kiil K, Lagesen K, Sicheritz-Ponten T, Bohlin J, Wassenaar TM. 2009. The genus Burkholderia: analysis of 56 genomic sequences. Genome Dyn 6:140–157. doi:10.1159/000235768. PubMed DOI
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: Rapid Annotations using Subsystems Technology. BMC Genomics 9:75-2164-9-75. doi:10.1186/1471-2164-9-75. PubMed DOI PMC
Juhas M, Stark M, von Mering C, Lumjiaktase P, Crook DW, Valvano MA, Eberl L. 2012. High confidence prediction of essential genes in Burkholderia cenocepacia. PLoS One 7:e40064. doi:10.1371/journal.pone.0040064. PubMed DOI PMC