Histone H1 Differentially Inhibits DNA Bending by Reduced and Oxidized HMGB1 Protein

. 2015 ; 10 (9) : e0138774. [epub] 20150925

Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid26406975

HMGB1 protein and linker histone H1 have overlapping binding sites in the nucleosome. HMGB1 has been implicated in many DNA-dependent processes in chromatin involving binding of specific proteins, including transcription factors, to DNA sites pre-bent by HMGB1. HMGB1 can also act as an extracellular signaling molecule by promoting inflammation, tumor growth a metastasis. Many of the intra- and extracellular functions of HMGB1 depend on redox-sensitive cysteine residues of the protein. Here we report that mild oxidization of HMGB1 (and much less mutation of cysteines involved in disulphide bond formation) can severely compromise the functioning of the protein as a DNA chaperone by inhibiting its ability to unwind or bend DNA. Histone H1 (via the highly basic C-terminal domain) significantly inhibits DNA bending by the full-length HMGB1, and the inhibition is further enhanced upon oxidization of HMGB1. Interestingly, DNA bending by HMGB1 lacking the acidic C-tail (HMGB1ΔC) is much less affected by histone H1, but oxidization rendered DNA bending by HMGB1ΔC and HMGB1 equally prone for inhibition by histone H1. Possible consequences of histone H1-mediated inhibition of DNA bending by HMGB1 of different redox state for the functioning of chromatin are discussed.

Zobrazit více v PubMed

Thomas JO (2001) HMG1 and 2: architectural DNA-binding proteins. Biochem Soc Trans 29: 395–401. PubMed

Pallier C, Scaffidi P, Chopineau-Proust S, Agresti A, Nordmann P, Bianchi ME, et al. (2003) Association of chromatin proteins high mobility group box (HMGB) 1 and HMGB2 with mitotic chromosomes. Mol Biol Cell 14: 3414–3426. PubMed PMC

Travers A (2000) Recognition of distorted DNA structures by HMG domains. Curr Opin Struct Biol 10: 102–109. PubMed

Štros M (2010) HMGB proteins: interactions with DNA and chromatin. Biochim Biophys Acta 1799: 101–113. 10.1016/j.bbagrm.2009.09.008 PubMed DOI

Kang R, Zhang Q, Zeh HJ 3rd, Lotze MT, Tang D (2013) HMGB1 in cancer: good, bad, or both? Clin Cancer Res 19: 4046–4057. 10.1158/1078-0432.CCR-13-0495 PubMed DOI PMC

Gerlitz G, Hock R, Ueda T, Bustin M (2009) The dynamics of HMG protein-chromatin interactions in living cells. Biochem Cell Biol 87: 127–137. 10.1139/O08-110 PubMed DOI PMC

Tang D, Billiar TR, Lotze MT (2012) A Janus tale of two active high mobility group box 1 (HMGB1) redox states. Mol Med 18: 1360–1362. 10.2119/molmed.2012.00314 PubMed DOI PMC

Venereau E, Casalgrandi M, Schiraldi M, Antoine DJ, Cattaneo A, De Marchis F, et al. (2012) Mutually exclusive redox forms of HMGB1 promote cell recruitment or proinflammatory cytokine release. J Exp Med 209: 1519–1528. 10.1084/jem.20120189 PubMed DOI PMC

Billings PC, Davis RJ, Engelsberg BN, Skov KA, Hughes EN (1992) Characterization of high mobility group protein binding to cisplatin-damaged DNA. Biochem Biophys Res Commun 188: 1286–1294. PubMed

Sheflin LG, Fucile NW, Spaulding SW (1993) The specific interactions of HMG 1 and 2 with negatively supercoiled DNA are modulated by their acidic C-terminal domains and involve cysteine residues in their HMG 1/2 boxes. Biochemistry 32: 3238–3248. PubMed

Štros M, Štokrová J, Thomas JO (1994) DNA looping by the HMG-box domains of HMG1 and modulation of DNA binding by the acidic C-terminal domain. Nucleic Acids Res 22: 1044–1051. PubMed PMC

Park S, Lippard SJ (2011) Redox state-dependent interaction of HMGB1 and cisplatin-modified DNA. Biochemistry 50: 2567–2574. 10.1021/bi2000214 PubMed DOI PMC

Polanská E, Pospíšilová Š, Štros M (2014) Binding of histone H1 to DNA is differentially modulated by redox state of HMGB1. PLoS One 9: e89070 10.1371/journal.pone.0089070 PubMed DOI PMC

Štros M, Launholt D, Grasser KD (2007) The HMG-box: a versatile protein domain occurring in a wide variety of DNA-binding proteins. Cell Mol Life Sci 64: 2590–2606. PubMed PMC

Thomas JO, Stott K (2012) H1 and HMGB1: modulators of chromatin structure. Biochem Soc Trans 40: 341–346. 10.1042/BST20120014 PubMed DOI

Kohlstaedt LA, Cole RD (1994) Specific interaction between H1 histone and high mobility protein HMG1. Biochemistry 33: 570–575. PubMed

Štros M, Vorlíčková M (1990) Non-histone chromosomal protein HMG1 reduces the histone H5-induced changes in c.d. spectra of DNA: the acidic C-terminus of HMG1 is necessary for binding to H5. Int J Biol Macromol 12: 282–288. PubMed

Cato L, Stott K, Watson M, Thomas JO (2008) The interaction of HMGB1 and linker histones occurs through their acidic and basic tails. J Mol Biol 384: 1262–1272. 10.1016/j.jmb.2008.10.001 PubMed DOI

Lu X, Hansen JC (2004) Identification of specific functional subdomains within the linker histone H10 C-terminal domain. J Biol Chem 279: 8701–8707. PubMed

Štros M (2001) Two mutations of basic residues within the N-terminus of HMG-1 B domain with different effects on DNA supercoiling and binding to bent DNA. Biochemistry 40: 4769–4779. PubMed

Štros M (1998) DNA bending by the chromosomal protein HMG1 and its high mobility group box domains. Effect of flanking sequences. J Biol Chem 273: 10355–10361. PubMed

Štros M, Bačíková A, Polanská E, Štokrová J, Strauss F (2007) HMGB1 interacts with human topoisomerase IIalpha and stimulates its catalytic activity. Nucleic Acids Res 35: 5001–5013. PubMed PMC

Hardman CH, Broadhurst RW, Raine AR, Grasser KD, Thomas JO, Laue ED (1995) Structure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy. Biochemistry 34: 16596–16607. PubMed

Wang J, Tochio N, Takeuchi A, Uewaki JI, Kobayashi N, Tate SI (2013) Redox-sensitive structural change in the A-domain of HMGB1 and its implication for the binding to cisplatin modified DNA. Biochem Biophys Res Commun. 10.1016/j.bbrc.2013.10.085 PubMed DOI

Paull TT, Haykinson MJ, Johnson RC (1993) The nonspecific DNA-binding and-bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev 7: 1521–1534. PubMed

Pil PM, Chow CS, Lippard SJ (1993) High-mobility-group 1 protein mediates DNA bending as determined by ring closures. Proc Natl Acad Sci U S A 90: 9465–9469. PubMed PMC

Teo SH, Grasser KD, Thomas JO (1995) Differences in the DNA-binding properties of the HMG-box domains of HMG1 and the sex-determining factor SRY. Eur J Biochem 230: 943–950. PubMed

Thomas JO, Travers AA (2001) HMG1 and 2, and related 'architectural' DNA-binding proteins. Trends Biochem Sci 26: 167–174. PubMed

Ueda T, Yoshida M (2010) HMGB proteins and transcriptional regulation. Biochim Biophys Acta 1799: 114–118. 10.1016/j.bbagrm.2009.11.005 PubMed DOI

Sobczak J, Duguet M (1988) Effect of histone H1, poly(ethyleneglycol) and DNA concentration on intermolecular and intramolecular ligation by T4 DNA ligase. Eur J Biochem 175: 379–385. PubMed

Štros M, Cherny D, Jovin TM (2000) HMG1 protein stimulates DNA end joining by promoting association of DNA molecules via their ends. Eur J Biochem 267: 4088–4097. PubMed

Yamanaka S, Katayama E, Yoshioka K, Nagaki S, Yoshida M, Teraoka H (2002) Nucleosome linker proteins HMGB1 and histone H1 differentially enhance DNA ligation reactions. Biochem Biophys Res Commun 292: 268–273. PubMed

Teo SH, Grasser KD, Hardman CH, Broadhurst RW, Laue ED, Thomas JO (1995) Two mutations in the HMG-box with very different structural consequences provide insights into the nature of binding to four-way junction DNA. Embo J 14: 3844–3853. PubMed PMC

Belgrano FS, de Abreu da Silva IC, Bastos de Oliveira FM, Fantappie MR, Mohana-Borges R (2013) Role of the acidic tail of high mobility group protein B1 (HMGB1) in protein stability and DNA bending. PLoS One 8: e79572 10.1371/journal.pone.0079572 PubMed DOI PMC

Sanchez-Giraldo R, Acosta-Reyes FJ, Malarkey CS, Saperas N, Churchill ME, Campos JL (2015) Two high-mobility group box domains act together to underwind and kink DNA. Acta Crystallogr D Biol Crystallogr 71: 1423–1432. 10.1107/S1399004715007452 PubMed DOI PMC

Jackson JB, Pollock JM Jr, Rill RL (1979) Chromatin fractionation procedure that yields nucleosomes containing near-stoichiometric amounts of high mobility group nonhistone chromosomal proteins. Biochemistry 18: 3739–3748. PubMed

Zlatanova J, van Holde K (1998) Linker histones versus HMG1/2: a struggle for dominance? Bioessays 20: 584–588. PubMed

Phair RD, Scaffidi P, Elbi C, Vecerová J, Dey A, Ozato K, et al. (2004) Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins. Mol Cell Biol 24: 6393–6402. PubMed PMC

Scaffidi P, Misteli T, Bianchi ME (2002) Release of chromatin protein HMGB1 by necrotic cells triggers inflammation. Nature 418: 191–195. PubMed

Misteli T, Gunjan A, Hock R, Bustin M, Brown DT (2000) Dynamic binding of histone H1 to chromatin in living cells. Nature 408: 877–881. PubMed

Ura K, Nightingale K, Wolffe AP (1996) Differential association of HMG1 and linker histones B4 and H1 with dinucleosomal DNA: structural transitions and transcriptional repression. EMBO J 15: 4959–4969. PubMed PMC

Nejnovějších 20 citací...

Zobrazit více v
Medvik | PubMed

Progress in Assays of HMGB1 Levels in Human Plasma-The Potential Prognostic Value in COVID-19

. 2022 Apr 05 ; 12 (4) : . [epub] 20220405

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...