Crystallographic Tool Box (CrysTBox): automated tools for transmission electron microscopists and crystallographers

. 2015 Dec 01 ; 48 (Pt 6) : 2012-2018. [epub] 20151021

Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid26664349

Three tools for an automated analysis of electron diffraction pattern and crystallographic visualization are presented. Firstly, diffractGUI determines the zone axis from selected area diffraction, convergent beam diffraction or nanodiffraction patterns and allows for indexing of individual reflections. Secondly, ringGUI identifies crystallographic planes corresponding to the depicted rings in the ring diffraction pattern and can select the sample material from a list of candidates. Both diffractGUI and ringGUI employ methods of computer vision for a fast, robust and accurate analysis. Thirdly, cellViewer is an intuitive visualization tool which is also helpful for crystallographic calculations or educational purposes. diffractGUI and cellViewer can be used together during a transmission electron microscopy session to determine the sample holder tilts required to reach a desired zone axis. All the tools offer a graphical user interface. The toolbox is distributed as a standalone application, so it can be installed on the microscope computer and launched directly from DigitalMicrograph (Gatan Inc.).

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Atherton, T. & Kerbyson, D. (1999). Image Vis. Comput. 17, 795–803.

Belletti, D., Calestani, G., Gemmi, M. & Migliori, A. (2000). Ultramicroscopy, 81, 57–65. PubMed

Boudias, C. & Monceau, D. (1998). CaRine Crystallography. Compiègne: DIVERGENT SA.

Duden, T., Gautam, A. & Dahmen, U. (2011). Ultramicroscopy, 111, 1574–1580. PubMed

Fischler, M. A. & Bolles, R. C. (1981). Commun. ACM, 24, 381–395.

Fischler, M. A. & Bolles, R. C. (1987). Readings in Computer Vision: Issues, Problems, Principles, and Paradigms, pp. 726–740. San Francisco: Morgan Kaufmann Publishers.

Hou, V. (2008). Microsc. Microanal. 14, 1124–1125.

Klinger, M. (2015). CrysTBox – Crystallographic Toolbox. Institute of Physics of the Czech Academy of Sciences, Prague, Czech Republic.

Klinger, M., Němec, M., Polívka, L., Gärtnerová, V. & Jäger, A. (2015). Ultramicroscopy, 150, 88–95. PubMed

Lábár, J. L. (2005). Ultramicroscopy, 103, 237–249. PubMed

Lábár, J. L. (2009). Microsc. Microanal. 15, 20–29. PubMed

Li, X. (2007). Microsc. Microanal. 13, 966–967.

Li, X. (2014). Microsc. Microanal. 20, 1486–1487.

Lowe, D. (2004). Int. J. Comput. Vis. 60, 91–110.

Mitchell, D. (2008a). Ultramicroscopy, 108, 367–374. PubMed

Mitchell, D. (2008b). Microsc. Res. Tech. 71, 588–593. PubMed

Mitchell, D. & Schaffer, B. (2005). Ultramicroscopy, 103, 319–332. PubMed

Momma, K. & Izumi, F. (2008). J. Appl. Cryst. 41, 653–658.

Ozawa, T. C. & Kang, S. J. (2004). J. Appl. Cryst. 37, 679.

Reid, J., Crane, D., Blanton, J., Crowder, C., Kabekkodu, S. & Fawcett, T. (2011). Microsc. Today, 19, 32–37.

Stadelmann, P. (2004). JEMS – EMS Java Version V4. CIME-EPFL, Lausanne, Switzerland.

Wu, C. Jr, Reynolds, W. T. Jr & Murayama, M. (2012). Ultramicroscopy, 112, 10–14. PubMed

Yuen, H. K., Princen, J., Illingworth, J. & Kittler, J. (1990). Image Vis. Comput. 8, 71–77.

Zhang, L., Holt, C. M. B., Luber, E. J., Olsen, B. C., Wang, H., Danaie, M., Cui, X., Tan, X., Lui, V. W., Kalisvaart, W. P. & Mitlin, D. (2011). J. Phys. Chem. C, 115, 24381–24393.

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