Agrobacteriumsp. strain R89-1 isolated from composted wastes ofPapaver somniferumcan effectively biotransform codeine/morphine into 14-OH-derivatives. Here, we present a 4.7-Mb assembly of the R89-1 strain genome. The draft shows that the strain R89-1 represents a distinct phylogenetic lineage within the genusAgrobacterium.

Laboratory of Enzyme Technology Institute of Microbiology CAS v v i Prague Czech Republic

Laboratory of Enzyme Technology Institute of Microbiology CAS v v i Prague Czech Republic Department of Genetics and Microbiology Faculty of Science Charles University Prague Prague Czech Republic Department of Biochemistry Faculty of Science Charles University Prague Prague Czech Republic

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Kyslíková E, Babiak P, Štěpánek V, Zahradník J, Palyzová A, Marešová H, Valešová R, Hájíček J, Kyslík P. 2013. Biotransformation of codeine to 14-OH-codeine derivatives by Rhizobium radiobacter R89-1. J Mol Catal B Enzymatic 87:1–5. doi:10.1016/j.molcatb.2012.10.004. DOI

Facchini PJ, Bohlmann J, Covello PS, De Luca V, Mahadevan R, Page EJ, Ro DK, Sensen CW, Storms R, Martin VJJ. 2012. Synthetic biosystems for the production of high-value plant metabolites. Trends Biotechnol 30:127–131. doi:10.1016/j.tibtech.2011.10.001. PubMed DOI

Galanie S, Thodey K, Trenchard IJ, Interrante MF, Smolke CD. 2015. Complete biosynthesis of opioids in yeast. Science 349:1095–1100. doi:10.1126/science.aac9373. PubMed DOI PMC

Hernando MD, Mezcua M, Fernández-Alba AR, Barceló D. 2006. Environmental risk assessment of pharmaceutical residues in wastewater effluents, surface waters and sediments. Talanta 69:334–342. doi:10.1016/j.talanta.2005.09.037. PubMed DOI

Magni S, Parolini M, Binelli A. 2016. Sublethal effects induced by morphine to the freshwater biological model Dreissena polymorpha. Environ Toxicol 31:58–67. doi:10.1002/tox.22021. PubMed DOI

Van Domselaar GH, Stothard P, Shrivastava S, Cruz JA, Guo A, Dong X, Lu P, Szafron D, Greiner R, Wishart DS. 2005. BASys: a web server for automated bacterial genome annotation. Nucleic Acids Res 33:W455–W459. doi:10.1093/nar/gki593. PubMed DOI PMC

Lagesen K, Hallin PF, Rødland EA, Stærfeldt HH, Rognes T, Ussery DW. 2007. RNammer: consistent annotation of rRNA genes in genomic sequences. Nucleic Acids Res 35:3100–3108. doi:10.1093/nar/gkm160. PubMed DOI PMC

Ramírez-Bahena MH, Vial L, Lassalle F, Diel B, Chapulliot D, Daubin V, Nesme X, Muller D. 2014. Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid. Mol Phylogenet Evol 73:202–207. doi:10.1016/j.ympev.2014.01.005. PubMed DOI

Costechareyre D, Rhouma A, Lavire C, Portier P, Chapulliot D, Bertolla F, Boubaker A, Dessaux Y, Nesme X. 2010. Rapid and efficient identification of Agrobacterium species by recA allele analysis. Microb Ecol 60:862–872. doi:10.1007/s00248-010-9685-7. PubMed DOI

Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106:19126–19131. doi:10.1073/pnas.0906412106. PubMed DOI PMC

Lindström K, Young JPW. 2011. International Committee on Systematics of Prokaryotes: subcommittee on the taxonomy of Agrobacterium and Rhizobium. Int J Syst Evol Microbiol 61:3089–3093. doi:10.1099/ijs.0.036913-0. PubMed DOI

The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form

Draft Genome Sequence of Pantoea agglomerans JM1, a Strain Isolated from Soil Polluted by Industrial Production of Beta-Lactam Antibiotics That Exhibits Valacyclovir-Like Hydrolase Activity