Iron(II) supramolecular helicates interfere with the HIV-1 Tat-TAR RNA interaction critical for viral replication
Jazyk angličtina Země Anglie, Velká Británie Médium electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
27405089
PubMed Central
PMC4940744
DOI
10.1038/srep29674
PII: srep29674
Knihovny.cz E-zdroje
- MeSH
- genové produkty tat - virus lidské imunodeficience metabolismus MeSH
- HIV-1 účinky léků fyziologie MeSH
- konformace nukleové kyseliny MeSH
- replikace viru účinky léků MeSH
- RNA virová chemie metabolismus MeSH
- vazba proteinů MeSH
- železnaté sloučeniny chemie farmakologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- genové produkty tat - virus lidské imunodeficience MeSH
- RNA virová MeSH
- železnaté sloučeniny MeSH
The interaction between the HIV-1 transactivator protein Tat and TAR (transactivation responsive region) RNA, plays a critical role in HIV-1 transcription. Iron(II) supramolecular helicates were evaluated for their in vitro activity to inhibit Tat-TAR RNA interaction using UV melting studies, electrophoretic mobility shift assay, and RNase A footprinting. The results demonstrate that iron(II) supramolecular helicates inhibit Tat-TAR interaction at nanomolar concentrations by binding to TAR RNA. These studies provide a new insight into the biological potential of metallosupramolecular helicates.
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Murchie A. I. H. et al.. Structure-based drug design targeting an inactive RNA conformation: Exploiting the flexibility of HIV-1 TAR RNA. J. Mol. Biol. 336, 625–638 (2004). PubMed
Hamy F. et al.. Hydrogen-bonding contacts in the major groove are required for human-immunodeficiency-virus type-1 tat protein recognition of TAR RNA. J. Mol. Biol. 230, 111–123 (1993). PubMed
Churcher M. J. et al.. High-affinity binding of TAR RNA by the human-immunodeficiency-virus type-1 Tat protein requires base-pairs in the RNA stem and amino-acid-residues flanking the basic region. J. Mol. Biol. 230, 90–110 (1993). PubMed
Aboul-ela F., Karn J. & Varani G. The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein. J. Mol. Biol. 253, 313–332 (1995). PubMed
Aboul-ela F., Karn J. & Varani G. Structure of HIV-1 TAR RNA in the Absence of Ligands Reveals a Novel Conformation of the Trinucleotide Bulge. Nucleic Acids Research 24, 3974–3981 (1996). PubMed PMC
Huq I., Ping Y. H., Tamilarasu N. & Rana T. M. Controlling human immunodeficiency virus type 1 gene expression by unnatural peptides. Biochemistry 38, 5172–5177 (1999). PubMed
Gallego J. & Varani G. Targeting RNA with small-molecule drugs: Therapeutic promise and chemical challenges. Acc. Chem. Res. 34, 836–843 (2001). PubMed
Dinesh C. U. & Rana T. M. In Small Molecule DNA and RNA Binders vol. 1 (eds Demeunynck M., Bailly C. & Wilson W. D.) 58–87 (Wiley-VCH Verlag GmbH & Co. KGaA, 2003).
Baba M. Recent status of HIV-1 gene expression inhibitors. Antiviral Res. 71, 301–306 (2006). PubMed
Davidson A. et al.. Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein. Proc. Natl. Acad. Sci. USA 106, 11931–11936 (2009). PubMed PMC
Zeiger M. et al.. Fragment based search for small molecule inhibitors of HIV-1 Tat-TAR. Bioorg. Med. Chem. Lett. 24, 5576–5580 (2014). PubMed
Oleksi A. et al.. Molecular recognition of a three-way DNA junction by a metallosupramolecular helicate. Angew. Chem., Intl. Ed. 45, 1227–1231 (2006). PubMed
Cerasino L., Hannon M. J. & Sletten E. DNA three-way junction with a dinuclear iron(II) supramolecular helicate at the center: A NMR structural study. Inorg. Chem. 46, 6245–6251 (2007). PubMed
Phongtongpasuk S. et al.. Binding of a designed anti-cancer drug to the central cavity of an RNA three-way junction. Angew. Chem. Int. Ed. 52, 11513–11516 (2013). PubMed
Malina J., Hannon M. J. & Brabec V. Recognition of DNA three-way junctions by metallosupramolecular cylinders: Gel electrophoresis studies. Chem. Eur. J. 13, 3871–3877 (2007). PubMed
Yu H., Wang X., Fu M., Ren J. & Qu X. Chiral metallo-supramolecular complexes selectively recognize human telomeric G-quadruplex DNA. Nucl. Acids. Res. 36, 5695–5703 (2008). PubMed PMC
Buck D. P., Spillane C. B., Collins J. G. & Keene F. R. Binding of a dinuclear ruthenium(II) complex to the TAR region of the HIV-AIDS viral RNA. Mol. BioSyst. 4, 851–854 (2008). PubMed
Buck D. P., Paul J. A., Pisani M. J., Collins J. G. & Keene F. R. Binding of a flexibly-linked dinuclear ruthenium(II) complex to adenine-bulged DNA duplexes. Aust. J. Chem. 63, 1365–1375 (2010).
Malina J., Hannon M. J. & Brabec V. Recognition of DNA bulges by dinuclear iron(II) metallosupramolecular helicates. FEBS J. 281, 987–997 (2014). PubMed
Wang D. et al.. Multivalent binding oligomers inhibit HIV Tat–TAR interaction critical for viral replication. Bioorg. Med. Chem. Lett. 19, 6893–6897 (2009). PubMed PMC
Wang J. et al.. Design, synthesis and biological evaluation of substituted guanidine indole derivatives as potential inhibitors of HIV-1 Tat-TAR interaction. Med. Chem. 10, 738–746 (2014). PubMed
Manfroni G. et al.. Synthesis and biological evaluation of 2-phenylquinolones targeted at Tat/TAR recognition. Bioorg. Med. Chem. Lett. 19, 714–717 (2009). PubMed
Pang R. F., Zhang C. L., Yuan D. K. & Yang M. Design and SAR of new substituted purines bearing aryl groups at N9 position as HIV-1 Tat-TAR interaction inhibitors. Bioorg. Med. Chem. 16, 8178–8186 (2008). PubMed
Hannon M. J., Painting C. L., Jackson A., Hamblin J. & Errington W. An inexpensive approach to supramolecular architecture. Chem. Commun., 1807–1808 (1997).
Hannon M. J. et al.. Intramolecular DNA coiling mediated by a metallo-supramolecular cylinder. Angew. Chem. Intl. Ed. 40, 879–884 (2001). PubMed
Meistermann I. et al.. Intramolecular DNA coiling mediated by metallosupramolecular cylinders: Differential binding of P and M helical enantiomers. Proc. Natl. Acad. Sci. USA 99, 5069–5074 (2002). PubMed PMC