Applying an Archetype-Based Approach to Electroencephalography/Event-Related Potential Experiments in the EEGBase Resource
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
28428750
PubMed Central
PMC5382193
DOI
10.3389/fninf.2017.00024
Knihovny.cz E-zdroje
- Klíčová slova
- EHR, archetype, electroencephalography, event-related potentials, odML, ontology, openEHR,
- Publikační typ
- časopisecké články MeSH
PURPOSE: The purpose of this study is to investigate the feasibility of applying openEHR (an archetype-based approach for electronic health records representation) to modeling data stored in EEGBase, a portal for experimental electroencephalography/event-related potential (EEG/ERP) data management. The study evaluates re-usage of existing openEHR archetypes and proposes a set of new archetypes together with the openEHR templates covering the domain. The main goals of the study are to (i) link existing EEGBase data/metadata and openEHR archetype structures and (ii) propose a new openEHR archetype set describing the EEG/ERP domain since this set of archetypes currently does not exist in public repositories. METHODS: The main methodology is based on the determination of the concepts obtained from EEGBase experimental data and metadata that are expressible structurally by the openEHR reference model and semantically by openEHR archetypes. In addition, templates as the third openEHR resource allow us to define constraints over archetypes. Clinical Knowledge Manager (CKM), a public openEHR archetype repository, was searched for the archetypes matching the determined concepts. According to the search results, the archetypes already existing in CKM were applied and the archetypes not existing in the CKM were newly developed. openEHR archetypes support linkage to external terminologies. To increase semantic interoperability of the new archetypes, binding with the existing odML electrophysiological terminology was assured. Further, to increase structural interoperability, also other current solutions besides EEGBase were considered during the development phase. Finally, a set of templates using the selected archetypes was created to meet EEGBase requirements. RESULTS: A set of eleven archetypes that encompassed the domain of experimental EEG/ERP measurements were identified. Of these, six were reused without changes, one was extended, and four were newly created. All archetypes were arranged in the templates reflecting the EEGBase metadata structure. A mechanism of odML terminology referencing was proposed to assure semantic interoperability of the archetypes. The openEHR approach was found to be useful not only for clinical purposes but also for experimental data modeling.
Department of Computer Science and Engineering University of West Bohemia Plzeň Czech Republic
New Technologies for the Information Society University of West Bohemia Plzeň Czech Republic
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Beale T. (2016). EHR Information Model. Available at: http://www.openehr.org/releases/RM/latest/docs/ehr/ehr.html
BrainProducts. (2013). BrainVision Recorder: User Manual. Brain Products GmbH; Available at: http://www.brainproducts.com/
Clark J., DeRose S. (1999). XML Path Language (XPath) Version 1.0. Available at: https://www.w3.org/TR/xpath/
Dolin R. H., Alschuler L., Boyer S., Beebe C., Behlen F. M., Biron P. V., et al. (2006). HL7 clinical document architecture, release 2. J. Am. Med. Inform. Assoc. 13, 30–39.10.1197/jamia.M1888 PubMed DOI PMC
Folk M., Heber G., Koziol Q., Pourmal E., Robinson D. (2011). “An overview of the HDF5 technology suite and its applications,” in Proceedings of the EDBT/ICDT 2011 Workshop on Array Databases, AD ’11 (New York, NY, USA: ACM), 36–47.
Grewe J., Wachtler T., Benda J. (2011). A bottom-up approach to data annotation in neurophysiology. Front. Neuroinform. 5, 16.10.3389/fninf.2011.00016 PubMed DOI PMC
Ježek P., Mouček R. (2012). System for EEG/ERP data and metadata storage and management. Neural Network World 22, 277.10.14311/NNW.2012.22.016 DOI
Kalra D., Beale T., Heard S. (2005). The openEHR foundation. Stud. Health Technol. Inform. 115, 153–173. PubMed
Kemp B., Olivan J. (2003). European data format ‘plus’ (EDF+), an EDF alike standard format for the exchange of physiological data. Neurophysiol. Clin. 114, 1755–1761.10.1016/S1388-2457(03)00123-8 PubMed DOI
Kemp B., Värri A., Rosa A. C., Nielsen K. D., Gade J. (1992). A simple format for exchange of digitized polygraphic recordings. Electroencephalogr. Clin. Neurophysiol. 82, 391–393.10.1016/0013-4694(92)90009-7 PubMed DOI
Le Franc Y., Bandrowski A., Brůha P., Papež V., Grewe J., Mouček R., et al. (2014). Describing neurophysiology data and metadata with OEN, the ontology for experimental neurophysiology. Front. Neuroinform. Conference Abstract: Neuroinformatics 201410.3389/conf.fninf.2014.18.00044 DOI
Mouček R., Brůha P., Ježek P., Mautner P., Novotný J., Papež V., et al. (2014). Software and hardware infrastructure for research in electrophysiology. Front. Neuroinform. 8:20.10.3389/fninf.2014.00020 PubMed DOI PMC
Muñoz P., Trigo J. D., Martínez I., Muñoz A., Escayola J., García J. (2011). The ISO/EN 13606 standard for the interoperable exchange of electronic health records. J. Healthc. Eng. 2, 1–24.10.1260/2040-2295.2.1.1 DOI
NISOPress. (2004). Understanding Metadata. Bethesda, MD: National Information Standards, 20.
Papež V., Mouček R. (2015). “Archetypes development in electrophysiology domain – electroencephalography as a personal EHR system module,” in Proceedings of the International Conference on Health Informatics, Lisbon, 611–616.10.5220/0005282806110616 DOI
Stearns M. Q., Price C., Spackman K. A., Wang A. Y. (2001). “SNOMED clinical terms: overview of the development process and project status,” in Proceedings of the AMIA Symposium (Washington, DC: American Medical Informatics Association), 662. PubMed PMC
Stoewer A., Kellner C. J., Benda J., Wachtler T., Grewe J. (2014). File format and library for neuroscience data and metadata. Front. Neuroinform. 8:27.10.3389/conf.fninf.2014.18.00027 PubMed DOI
Teeters J. L., Godfrey K., Young R., Dang C., Friedsam C., Wark B., et al. (2015). Neurodata without borders: creating a common data format for neurophysiology. Neuron 88, 629–634.10.1016/j.neuron.2015.10.025 PubMed DOI