Complete Genome Sequence of the Type Strain of Macrococcus canis
Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic
Typ dokumentu časopisecké články
PubMed
29348359
PubMed Central
PMC5773744
DOI
10.1128/genomea.01507-17
PII: 6/3/e01507-17
Knihovny.cz E-zdroje
- Publikační typ
- časopisecké články MeSH
The first complete genome sequence of the recently described Macrococcus canis species has been determined for the strain KM45013T (=DSM 101690T = CCOS 969T = CCUG 68920T = CCM 8748T). The strain was isolated from a dog with rhinitis and contains a putative γ-hemolysin and a mecB-carrying staphylococcal cassette chromosome mec element (SCCmecKM45013).
Department of Experimental Biology Faculty of Science Masaryk University Brno Czech Republic
Institute of Veterinary Bacteriology Vetsuisse Faculty University of Bern Bern Switzerland
Zobrazit více v PubMed
Gobeli Brawand S, Cotting K, Gómez-Sanz E, Collaud A, Thomann A, Brodard I, Rodriguez-Campos S, Strauss C, Perreten V. 2017. Macrococcus canis sp. nov., a skin bacterium associated with infections in dogs. Int J Syst Evol Microbiol 67:621–626. doi:10.1099/ijsem.0.001673. PubMed DOI
Cotting K, Strauss C, Rodriguez-Campos S, Rostaher A, Fischer NM, Roosje PJ, Favrot C, Perreten V. 2017. Macrococcus canis and M. caseolyticus in dogs: occurrence, genetic diversity and antibiotic resistance. Vet Dermatol 28:559–e133. doi:10.1111/vde.12474. PubMed DOI
Gómez-Sanz E, Schwendener S, Thomann A, Gobeli Brawand S, Perreten V. 2015. First staphylococcal cassette chromosome mec containing a mecB-carrying gene complex independent of transposon Tn6045 in a Macrococcus caseolyticus isolate from a canine infection. Antimicrob Agents Chemother 59:4577–4583. doi:10.1128/AAC.05064-14. PubMed DOI PMC
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res 27:722–736. doi:10.1101/gr.215087.116. PubMed DOI PMC
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357–359. doi:10.1038/nmeth.1923. PubMed DOI PMC
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup . 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079. doi:10.1093/bioinformatics/btp352. PubMed DOI PMC
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649. doi:10.1093/bioinformatics/bts199. PubMed DOI PMC
Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068–2069. doi:10.1093/bioinformatics/btu153. PubMed DOI
Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS. 2016. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16–W21. doi:10.1093/nar/gkw387. PubMed DOI PMC