Variant pathogenicity evaluation in the community-driven Inherited Neuropathy Variant Browser
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't
Grant support
R01 NS075764
NINDS NIH HHS - United States
U54 NS065712
NINDS NIH HHS - United States
PubMed
29473246
PubMed Central
PMC5903998
DOI
10.1002/humu.23412
Knihovny.cz E-resources
- Keywords
- VUS, database, inherited neuropathy, variants of unknown significance,
- MeSH
- Alleles MeSH
- Residence Characteristics * MeSH
- Charcot-Marie-Tooth Disease genetics MeSH
- Genetic Variation * MeSH
- Internet * MeSH
- Humans MeSH
- User-Computer Interface MeSH
- Search Engine MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Research Support, N.I.H., Extramural MeSH
Charcot-Marie-Tooth disease (CMT) is an umbrella term for inherited neuropathies affecting an estimated one in 2,500 people. Over 120 CMT and related genes have been identified and clinical gene panels often contain more than 100 genes. Such a large genomic space will invariantly yield variants of uncertain clinical significance (VUS) in nearly any person tested. This rise in number of VUS creates major challenges for genetic counseling. Additionally, fewer individual variants in known genes are being published as the academic merit is decreasing, and most testing now happens in clinical laboratories, which typically do not correlate their variants with clinical phenotypes. For CMT, we aim to encourage and facilitate the global capture of variant data to gain a large collection of alleles in CMT genes, ideally in conjunction with phenotypic information. The Inherited Neuropathy Variant Browser provides user-friendly open access to currently reported variation in CMT genes. Geneticists, physicians, and genetic counselors can enter variants detected by clinical tests or in research studies in addition to genetic variation gathered from published literature, which are then submitted to ClinVar biannually. Active participation of the broader CMT community will provide an advance over existing resources for interpretation of CMT genetic variation.
Department of Neurology University of Iowa Iowa City Iowa
Department of Neurology University of Pennsylvania Philadelphia Pennsylvania
Department of Neurology University of Rochester Rochester New York
Department of Paediatric Neurology Charles University Prague Czech Republic
Dr John T Macdonald Foundation Department of Human Genetics University of Miami Miami Florida
Hussman Institute for Human Genomics University of Miami Miami Florida
MRC Centre for Neuromuscular Diseases UCL Institute of Neurology Queen Square London UK
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