An overview of 25 years of research on Thermococcus kodakarensis, a genetically versatile model organism for archaeal research
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, přehledy
PubMed
31286382
DOI
10.1007/s12223-019-00730-2
PII: 10.1007/s12223-019-00730-2
Knihovny.cz E-zdroje
- MeSH
- archeální proteiny genetika MeSH
- metabolické sítě a dráhy MeSH
- Thermococcus genetika růst a vývoj metabolismus MeSH
- vysoká teplota MeSH
- výzkum trendy MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
- Názvy látek
- archeální proteiny MeSH
Almost 25 years have passed since the discovery of a planktonic, heterotrophic, hyperthermophilic archaeon named Thermococcus kodakarensis KOD1, previously known as Pyrococcus sp. KOD1, by Imanaka and coworkers. T. kodakarensis is one of the most studied archaeon in terms of metabolic pathways, available genomic resources, established genetic engineering techniques, reporter constructs, in vitro transcription/translation machinery, and gene expression/gene knockout systems. In addition to all these, ease of growth using various carbon sources makes it a facile archaeal model organism. Here, in this review, an attempt is made to reflect what we have learnt from this hyperthermophilic archaeon.
Zobrazit více v PubMed
J Bacteriol. 2009 Nov;191(22):7102-8 PubMed
Proteins. 2016 Sep;84(9):1321-7 PubMed
Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2711-6 PubMed
Nucleic Acids Res. 2005 Jun 13;33(10):3412-23 PubMed
J Bacteriol. 2003 Jan;185(1):210-20 PubMed
Appl Environ Microbiol. 1997 Nov;63(11):4504-10 PubMed
Nat Commun. 2014 Oct 14;5:5132 PubMed
Extremophiles. 2018 Mar;22(2):301-313 PubMed
Proteins. 2011 Feb;79(2):547-57 PubMed
Proteins. 2007 Aug 15;68(3):617-25 PubMed
J Bacteriol. 2012 Aug;194(15):4097-106 PubMed
ACS Chem Biol. 2017 Jun 16;12(6):1514-1523 PubMed
Mol Cell. 2007 Jul 6;27(1):29-40 PubMed
Extremophiles. 2019 Mar;23(2):229-238 PubMed
Structure. 2016 Nov 1;24(11):1960-1971 PubMed
BMC Struct Biol. 2013 Oct 18;13:22 PubMed
J Mol Biol. 2007 Sep 28;372(4):1055-1069 PubMed
J Mol Biol. 1999 Sep 24;292(3):707-16 PubMed
Biochemistry. 2015 Jun 9;54(22):3494-503 PubMed
Nucleic Acids Res. 2016 Jul 27;44(13):6377-90 PubMed
Biochem Biophys Res Commun. 2018 Jan 15;495(3):2189-2194 PubMed
Nat Commun. 2016 Nov 10;7:13420 PubMed
Nucleic Acids Res. 2016 Nov 2;44(19):9505-9517 PubMed
FEBS Lett. 2016 Jan;590(2):298-304 PubMed
J Biosci Bioeng. 2000;89(1):103-6 PubMed
J Bacteriol. 2002 Feb;184(3):777-84 PubMed
RNA. 2018 Aug;24(8):1080-1092 PubMed
J Mol Biol. 2005 Aug 12;351(2):291-8 PubMed
Nature. 1984 Jun 21-27;309(5970):677-81 PubMed
Protein Sci. 2006 Jan;15(1):152-61 PubMed
Acta Crystallogr D Struct Biol. 2018 Apr 1;74(Pt 4):305-314 PubMed
Enzyme Microb Technol. 2017 Jan;96:111-120 PubMed
Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20485-90 PubMed
Microb Biotechnol. 2017 Nov;10(6):1441-1444 PubMed
Biochemistry. 2013 Dec 17;52(50):9080-8 PubMed
J Biosci Bioeng. 2018 Mar;125(3):320-326 PubMed
J Bacteriol. 2010 Jan;192(1):191-7 PubMed
Acta Crystallogr F Struct Biol Commun. 2016 Nov 1;72(Pt 11):804-812 PubMed
J Mol Biol. 2009 Nov 27;394(2):306-19 PubMed
J Biol Chem. 2012 Jun 15;287(25):20784-96 PubMed
Acta Crystallogr F Struct Biol Commun. 2016 Jun;72(Pt 6):427-33 PubMed
Biochem Biophys Res Commun. 1999 May 10;258(2):416-24 PubMed
FEBS J. 2006 Jan;273(1):150-8 PubMed
Acta Crystallogr F Struct Biol Commun. 2016 May;72(Pt 5):369-75 PubMed
J Struct Biol. 2009 Nov;168(2):294-304 PubMed
Protein Sci. 2013 Dec;22(12):1711-21 PubMed
J Bacteriol. 2000 Nov;182(22):6424-33 PubMed
Protein Eng Des Sel. 2010 May;23(5):347-55 PubMed
Biochemistry. 2009 Nov 10;48(44):10637-43 PubMed
FEBS Open Bio. 2017 Jul 24;7(8):1217-1230 PubMed
J Bacteriol. 2004 Jul;186(14):4829-33 PubMed
J Bacteriol. 2007 Apr;189(7):2683-91 PubMed
Biochem J. 2017 Jan 1;474(1):105-122 PubMed
FEBS J. 2008 May;275(10):2632-43 PubMed
Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7835-40 PubMed
PLoS One. 2018 May 23;13(5):e0197635 PubMed
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1153-7 PubMed
J Bacteriol. 2011 Jun;193(12):3109-16 PubMed
Science. 2016 Jun 24;352(6293):1590-3 PubMed
Mol Microbiol. 2006 Aug;61(4):898-909 PubMed
EMBO J. 1998 Sep 1;17(17):5227-37 PubMed
Archaea. 2002 Sep;1(2):113-21 PubMed
Appl Microbiol Biotechnol. 2007 Apr;74(5):1153-61 PubMed
Appl Environ Microbiol. 2008 May;74(10):3099-104 PubMed
Appl Environ Microbiol. 2014 Feb;80(3):1108-15 PubMed
J Bacteriol. 2006 Jul;188(13):4698-704 PubMed
Mol Microbiol. 2008 Nov;70(3):623-33 PubMed
Nat Struct Mol Biol. 2013 Oct;20(10):1224-6 PubMed
Appl Environ Microbiol. 2008 Dec;74(23):7306-12 PubMed
Front Microbiol. 2012 Jun 08;3:195 PubMed
J Bacteriol. 2010 Oct;192(19):4991-5001 PubMed
J Biol Chem. 2002 Aug 30;277(35):31656-62 PubMed
Appl Environ Microbiol. 2017 Jul 17;83(15):null PubMed
Appl Environ Microbiol. 2007 Oct;73(19):6254-61 PubMed
Mol Microbiol. 2011 Sep;81(5):1300-12 PubMed
Front Microbiol. 2015 Jun 19;6:605 PubMed
Appl Environ Microbiol. 2011 Apr;77(7):2392-8 PubMed
J Biosci Bioeng. 2013 Oct;116(4):438-43 PubMed
Lett Appl Microbiol. 2013 Oct;57(4):336-43 PubMed
J Mol Biol. 2008 Oct 3;382(2):298-311 PubMed
J Mol Biol. 2007 Dec 14;374(5):1359-73 PubMed
Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7701-6 PubMed
Acta Crystallogr D Struct Biol. 2017 Nov 1;73(Pt 11):889-895 PubMed
Proteins. 2016 Oct;84(10):1339-46 PubMed
FEBS Lett. 1996 Sep 23;394(1):66-70 PubMed
Proteins. 2006 May 15;63(3):711-5 PubMed
Nature. 2012 Feb 22;482(7386):501-6 PubMed
Nucleic Acids Res. 2019 Feb 28;47(4):1964-1976 PubMed
FEBS J. 2017 Nov;284(21):3684-3701 PubMed
J Biol Chem. 2007 Nov 16;282(46):33659-70 PubMed
J Bacteriol. 2010 Oct;192(19):5192-202 PubMed
BMC Biol. 2011 Apr 28;9:28 PubMed
Eur J Biochem. 2002 Jan;269(2):650-6 PubMed
Appl Environ Microbiol. 2005 Jul;71(7):3889-99 PubMed
Biochem Biophys Res Commun. 2003 Jun 20;306(1):231-8 PubMed
Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7045-7050 PubMed
Genome Res. 2005 Mar;15(3):352-63 PubMed
PLoS One. 2017 Dec 6;12(12):e0188005 PubMed
J Biochem. 2010 Mar;147(3):361-70 PubMed
J Mol Biol. 2013 Aug 9;425(15):2709-21 PubMed
Archaea. 2008 Dec;2(3):145-9 PubMed
PLoS One. 2015 May 01;10(5):e0125325 PubMed
J Biol Chem. 2002 Aug 23;277(34):30649-55 PubMed
J Bacteriol. 2004 Sep;186(17):5799-807 PubMed
Appl Environ Microbiol. 2016 May 02;82(10):3022-3031 PubMed
J Biol Chem. 2013 Jul 19;288(29):20856-67 PubMed
Nat Commun. 2017 Nov 27;8(1):1810 PubMed
Chemphyschem. 2018 Sep 18;19(18):2299-2304 PubMed
Extremophiles. 2015 Jul;19(4):741-50 PubMed
J Bacteriol. 2006 Aug;188(16):5915-24 PubMed
J Mol Biol. 2007 Mar 23;367(2):344-57 PubMed
J Mol Biol. 2013 May 27;425(10):1627-40 PubMed
Nat Chem Biol. 2015 May;11(5):355-60 PubMed
Biochem Soc Trans. 2013 Feb 1;41(1):332-8 PubMed
Structure. 2001 Jun;9(6):473-81 PubMed
J Biotechnol. 2001 Jun 15;88(2):141-9 PubMed
J Biotechnol. 2005 Mar 30;116(3):271-82 PubMed
J Biosci Bioeng. 2018 Mar;125(3):275-281 PubMed
Nucleic Acids Res. 2016 Jul 27;44(13):6232-41 PubMed
Proteins. 2014 Sep;82(9):1924-36 PubMed
BMC Biotechnol. 2013 Feb 07;13:9 PubMed
J Mol Biol. 2001 Feb 23;306(3):469-77 PubMed
Chembiochem. 2013 Jun 17;14(9):1058-62 PubMed
J Biol Chem. 2016 Oct 7;291(41):21630-21643 PubMed
Appl Environ Microbiol. 2012 Jun;78(11):3806-15 PubMed
Biochemistry. 2012 Jul 3;51(26):5369-78 PubMed
Appl Environ Microbiol. 1994 Dec;60(12):4559-66 PubMed
Mol Microbiol. 2011 Aug;81(4):897-911 PubMed
Gene. 1995 Dec 1;166(1):139-43 PubMed
Biochim Biophys Acta. 2009 Nov;1794(11):1709-14 PubMed
Archaea. 2004 Oct;1(4):263-7 PubMed
Appl Environ Microbiol. 2013 Apr;79(7):2209-17 PubMed
Extremophiles. 2019 Jan;23(1):161-172 PubMed
FEBS Lett. 2008 Nov 26;582(28):3875-8 PubMed
Mol Gen Genet. 1996 Dec 13;253(3):397-400 PubMed
J Biol Chem. 2010 Dec 10;285(50):39339-47 PubMed
Nucleic Acids Res. 1998 Oct 1;26(19):4409-12 PubMed
J Bacteriol. 2018 May 9;200(11): PubMed
J Biol Chem. 2009 Oct 9;284(41):28137-45 PubMed
J Bacteriol. 2014 May;196(10):1866-76 PubMed
mBio. 2010 Oct 26;1(5):null PubMed
Protein Sci. 2001 Apr;10(4):707-14 PubMed
J Mol Biol. 2009 Dec 4;394(3):448-59 PubMed
Biosci Biotechnol Biochem. 2015;79(6):952-9 PubMed
Gene. 1995 Oct 16;164(1):153-6 PubMed