Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem
Grantová podpora
A10118
Cancer Research UK - United Kingdom
16563
Cancer Research UK - United Kingdom
29186
Cancer Research UK - United Kingdom
UL1 TR001863
NCATS NIH HHS - United States
26886
Cancer Research UK - United Kingdom
20861
Cancer Research UK - United Kingdom
A10710
Cancer Research UK - United Kingdom
16565
Cancer Research UK - United Kingdom
P20 GM130423
NIGMS NIH HHS - United States
UG1 CA233191
NCI NIH HHS - United States
19187
Cancer Research UK - United Kingdom
10118
Cancer Research UK - United Kingdom
R01 MH101244
NIMH NIH HHS - United States
MC_PC_14105
Medical Research Council - United Kingdom
R01 CA204954
NCI NIH HHS - United States
203477/Z/16/Z
Wellcome Trust - United Kingdom
P30 ES010126
NIEHS NIH HHS - United States
P30 CA016672
NCI NIH HHS - United States
P30 CA008748
NCI NIH HHS - United States
23382
Cancer Research UK - United Kingdom
U19 CA148065
NCI NIH HHS - United States
K08 CA234394
NCI NIH HHS - United States
20411
Cancer Research UK - United Kingdom
A16563
Cancer Research UK - United Kingdom
PubMed
31911677
PubMed Central
PMC6974400
DOI
10.1038/s41588-019-0537-1
PII: 10.1038/s41588-019-0537-1
Knihovny.cz E-zdroje
- MeSH
- Bayesova věta MeSH
- celogenomová asociační studie * MeSH
- genetická predispozice k nemoci * MeSH
- jednonukleotidový polymorfismus * MeSH
- lidé MeSH
- lokus kvantitativního znaku * MeSH
- mapování chromozomů metody MeSH
- nádorové biomarkery genetika MeSH
- nádory prsu genetika MeSH
- regulační oblasti nukleových kyselin MeSH
- rizikové faktory MeSH
- vazebná nerovnováha MeSH
- Check Tag
- lidé MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
- Názvy látek
- nádorové biomarkery MeSH
Genome-wide association studies have identified breast cancer risk variants in over 150 genomic regions, but the mechanisms underlying risk remain largely unknown. These regions were explored by combining association analysis with in silico genomic feature annotations. We defined 205 independent risk-associated signals with the set of credible causal variants in each one. In parallel, we used a Bayesian approach (PAINTOR) that combines genetic association, linkage disequilibrium and enriched genomic features to determine variants with high posterior probabilities of being causal. Potentially causal variants were significantly over-represented in active gene regulatory regions and transcription factor binding sites. We applied our INQUSIT pipeline for prioritizing genes as targets of those potentially causal variants, using gene expression (expression quantitative trait loci), chromatin interaction and functional annotations. Known cancer drivers, transcription factors and genes in the developmental, apoptosis, immune system and DNA integrity checkpoint gene ontology pathways were over-represented among the highest-confidence target genes.
Academic Unit of Pathology Department of Neuroscience University of Sheffield Sheffield UK
Anatomical Pathology The Alfred Hospital Melbourne Victoria Australia
Basser Center for BRCA Abramson Cancer Center University of Pennsylvania Philadelphia PA USA
Behavioral and Epidemiology Research Group American Cancer Society Atlanta GA USA
Biomedical Sciences Institute University of Porto Porto Portugal
BMC Faculty of Medicine University of Iceland Reykjavik Iceland
Breast Cancer Now Toby Robins Research Centre The Institute of Cancer Research London UK
Breast Cancer Research Programme Cancer Research Malaysia Kuala Lumpur Malaysia
Cancer Center Kuopio University Hospital Kuopio Finland
Cancer Epidemiology Division Cancer Council Victoria Melbourne Victoria Australia
Cancer Genetics and Prevention Program University of California San Francisco San Francisco CA USA
Cáncer Hereditario Instituto de Biología y Genética Molecular Valladolid Spain
Cancer Prevention Program Fred Hutchinson Cancer Research Center Seattle WA USA
Cancer Research Institute Seoul National University Seoul Korea
Cancer Research UK Cambridge Institute Li Ka Shing Centre University of Cambridge Cambridge UK
Cancer Risk and Prevention Clinic Dana Farber Cancer Institute Boston MA USA
Cancer Sciences Academic Unit Faculty of Medicine University of Southampton Southampton UK
Center for Clinical Cancer Genetics The University of Chicago Chicago IL USA
Center for Genomic Medicine at Rigshospitalet Copenhagen University Hospital Copenhagen Denmark
Center for Medical Genetics NorthShore University HealthSystem Evanston IL USA
Center for Population Health Research National Institute of Public Health Cuernavaca Mexico
Centre de Bioinformatique Biostatistique et Biologie Intégrative Institut Pasteur Paris France
Centre for Cancer Genetic Epidemiology Department of Oncology University of Cambridge Cambridge UK
Centre for Cancer Research and Cell Biology Queen's University Belfast Belfast UK
Centre for Medical Genetics Ghent University Ghent Belgium
Centro de Investigación en Biomédica en Red de Enfermedades Raras Madrid Spain
Chronic Disease Epidemiology Yale School of Public Health New Haven CT USA
Clinical and Molecular Genetics Area Vall Hebron University Hospital Barcelona Spain
Clinical Cancer Genomics City of Hope Duarte CA USA
Clinical Cancer Research Center Aalborg University Hospital Aalborg Denmark
Clinical Genetics Karolinska Institutet Stockholm Sweden
Department of Biomedical Sciences Seoul National University Graduate School Seoul Korea
Department of Breast Medical Oncology University of Texas MD Anderson Cancer Center Houston TX USA
Department of Cancer Biology and Genetics The Ohio State University Columbus OH USA
Department of Cancer Epidemiology and Genetics Masaryk Memorial Cancer Institute Brno Czech Republic
Department of Cancer Epidemiology Clinical Sciences Lund University Lund Sweden
Department of Clinical Genetics Erasmus University Medical Center Rotterdam the Netherlands
Department of Clinical Genetics Fox Chase Cancer Center Philadelphia PA USA
Department of Clinical Genetics Helsinki University Hospital University of Helsinki Helsinki Finland
Department of Clinical Genetics Karolinska University Hospital Stockholm Sweden
Department of Clinical Genetics Leiden University Medical Center Leiden the Netherlands
Department of Clinical Genetics Odense University Hospital Odence Denmark
Department of Clinical Medicine Aalborg University Aalborg Denmark
Department of Clinical Pathology The University of Melbourne Melbourne Victoria Australia
Department of Clinical Science and Education Södersjukhuset Karolinska Institutet Stockholm Sweden
Department of Epidemiology Harvard T H Chan School of Public Health Boston MA USA
Department of Epidemiology Mailman School of Public Health Columbia University New York NY USA
Department of Family Medicine and Public Health University of California San Diego La Jolla CA USA
Department of Genetics and Fundamental Medicine Bashkir State Medical University Ufa Russia
Department of Genetics and Pathology Pomeranian Medical University Szczecin Poland
Department of Genetics Portuguese Oncology Institute Porto Portugal
Department of Genetics University of Pretoria Pretoria South Africa
Department of Gynecology and Obstetrics University of Munich Munich Germany
Department of Health Science Research Division of Epidemiology Mayo Clinic Rochester MN USA
Department of Health Sciences Research Mayo Clinic Rochester MN USA
Department of Human Genetics Leiden University Medical Center Leiden the Netherlands
Department of Internal Medicine Evangelische Kliniken Bonn Johanniter Krankenhaus Bonn Germany
Department of Internal Medicine Huntsman Cancer Institute Salt Lake City UT USA
Department of Laboratory Medicine and Pathobiology University of Toronto Toronto Ontario Canada
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester MN USA
Department of Medical Epidemiology and Biostatistics Karolinska Institutet Stockholm Sweden
Department of Medical Genetics University of Cambridge Cambridge UK
Department of Medical Oncology Beth Israel Deaconess Medical Center Boston MA USA
Department of Medical Oncology University Hospital of Heraklion Heraklion Greece
Department of Medical Oncology Vall Hebron University Hospital Barcelona Spain
Department of Medicine Huntsman Cancer Institute Salt Lake City UT USA
Department of Medicine McGill University Montréal Québec Canada
Department of Molecular Genetics National Institute of Oncology Budapest Hungary
Department of Molecular Genetics University of Toronto Toronto Ontario Canada
Department of Molecular Medicine and Surgery Karolinska Institutet Stockholm Sweden
Department of Obstetrics and Gynecology Medical University of Vienna Vienna Austria
Department of Oncology Helsinki University Hospital University of Helsinki Helsinki Finland
Department of Oncology Lund University and Skåne University Hospital Lund Sweden
Department of Oncology Örebro University Hospital Örebro Sweden
Department of Oncology Södersjukhuset Stockholm Sweden
Department of Oncology University Hospital of Larissa Larissa Greece
Department of Pathology and Laboratory Medicine Kansas University Medical Center Kansas City KS USA
Department of Pathology Landspitali University Hospital Reykjavik Iceland
Department of Pathology Leiden University Medical Center Leiden the Netherlands
Department of Pathology School of Medicine Umm Al Qura University Holy Makkah Saudi Arabia
Department of Pathology University Hospital of Heraklion Heraklion Greece
Department of Population Sciences Beckman Research Institute of City of Hope Duarte CA USA
Department of Preventive Medicine Seoul National University College of Medicine Seoul Korea
Department of Radiation Oncology Hannover Medical School Hannover Germany
Department of Surgery Faculty of Medicine University of Malaya Kuala Lumpur Malaysia
Department of Surgery Hong Kong Sanatorium and Hospital Happy Valley Hong Kong
Department of Surgery Leiden University Medical Center Leiden the Netherlands
Department of Surgery National University Health System Singapore Singapore
Department of Surgery Oulu University Hospital University of Oulu Oulu Finland
Department of Surgery The University of Hong Kong Pok Fu Lam Hong Kong
Department of Surgical Sciences Uppsala University Uppsala Sweden
Department of Tumour Biology INSERM U830 Paris France
Departments of Pediatrics and Medicine Columbia University New York NY USA
Division of Breast Cancer Research The Institute of Cancer Research London UK
Division of Cancer Epidemiology and Prevention Aichi Cancer Center Research Institute Nagoya Japan
Division of Cancer Epidemiology German Cancer Research Center Heidelberg Germany
Division of Cancer Epidemiology Nagoya University Graduate School of Medicine Nagoya Japan
Division of Cancer Prevention and Genetics European Institute of Oncology IRCCS Milan Italy
Division of Cancer Sciences University of Manchester Manchester UK
Division of Clinical Epidemiology and Aging Research Heidelberg Germany
Division of Clinical Epidemiology Royal Victoria Hospital McGill University Montréal Québec Canada
Division of Epidemiology Center for Public Health Sciences National Cancer Center Tokyo Japan
Division of Genetics and Epidemiology Institute of Cancer Research London UK
Division of Genetics and Epidemiology The Institute of Cancer Research London UK
Division of Preventive Oncology German Cancer Research Center Heidelberg Germany
Dr Margarete Fischer Bosch Institute of Clinical Pharmacology Stuttgart Germany
Faculty of Health and Medical Sciences University of Copenhagen Copenhagen Denmark
Faculty of Information Technology Monash University Melbourne Victoria Australia
Faculty of Medicine University of Heidelberg Heidelberg Germany
Faculty of Medicine University of Southampton Southampton UK
Familial Cancer Service Weatmead Hospital Sydney New South Wales Australia
Frauenklinik der Stadtklinik Baden Baden Baden Baden Germany
Fundación Pública Galega de Medicina Xenómica Santiago de Compostela Spain
Genetic Epidemiology of Cancer Team INSERM U900 Paris France
Genome Diagnostics Program IFOM the FIRC Institute of Molecular Oncology Milan Italy
Genome Sciences Centre BC Cancer Agency Vancouver British Columbia Canada
Genomic Epidemiology Group German Cancer Research Center Heidelberg Germany
German Cancer Consortium Heidelberg Germany
Gynaecology Research Unit Hannover Medical School Hannover Germany
High Risk and Cancer Prevention Group Vall Hebron Institute of Oncology Barcelona Spain
Hong Kong Hereditary Breast Cancer Family Registry Cancer Genetics Centre Happy Valley Hong Kong
Human Cancer Genetics Programme Spanish National Cancer Research Centre Madrid Spain
Hunter Medical Research Institute John Hunter Hospital Newcastle New South Wales Australia
iFIT Cluster of Excellence University of Tuebingen Tuebingen Germany
Imaging Center Department of Clinical Pathology Kuopio University Hospital Kuopio Finland
Immunology and Molecular Oncology Unit Veneto Institute of Oncology IRCCS Padua Italy
Institute for Medical Informatics Statistics and Epidemiology University of Leipzig Leipzig Germany
Institute of Biomedical Sciences Academia Sinica Taipei Taiwan
Institute of Cancer and Genomic Sciences University of Birmingham Birmingham UK
Institute of Clinical Medicine Faculty of Medicine University of Oslo Oslo Norway
Institute of Clinical Medicine Oncology University of Eastern Finland Kuopio Finland
Institute of Environmental Medicine Karolinska Institutet Stockholm Sweden
Institute of Human Genetics Hannover Medical School Hannover Germany
Institute of Human Genetics Pontificia Universidad Javeriana Bogota Colombia
Institute of Human Genetics University Hospital Heidelberg Heidelberg Germany
Institute of Medical Genetics and Applied Genomics University of Tübingen Tübingen Germany
Instituto de Investigación Sanitaria de Santiago de Compostela Santiago de Compostela Spain
International Epidemiology Institute Rockville MD USA
Laboratory Medicine Program University Health Network Toronto Ontario Canada
Laboratory of Cancer Genetics and Tumor Biology Northern Finland Laboratory Centre Oulu Oulu Finland
Latvian Biomedical Research and Study Centre Riga Latvia
Lombardi Comprehensive Cancer Center Georgetown University Washington DC USA
Medical Faculty Universidad de La Sabana Bogota Colombia
Medical Oncology Department Hospital Universitario Puerta de Hierro Madrid Spain
Molecular Diagnostics Aalborg University Hospital Aalborg Denmark
Molecular Epidemiology Group Heidelberg Germany
Molecular Genetics of Breast Cancer German Cancer Research Center Heidelberg Germany
Moores Cancer Center University of California San Diego La Jolla CA USA
N N Alexandrov Research Institute of Oncology and Medical Radiology Minsk Belarus
N N Petrov Institute of Oncology St Petersburg Russia
Network Aging Research University of Heidelberg Heidelberg Germany
NRG Oncology Statistics and Data Management Center Roswell Park Cancer Institute Buffalo NY USA
Nuffield Department of Population Health University of Oxford Oxford UK
Oncogenetics Group Vall d'Hebron Institute of Oncology Barcelona Spain
Parkville Familial Cancer Centre Peter MacCallum Cancer Center Melbourne Victoria Australia
Population Oncology BC Cancer Vancouver British Columbia Canada
ProCURE Catalan Institute of Oncology Bellvitge Biomedical Research Institute Barcelona Spain
Radiation Oncology Hospital Meixoeiro XXI de Vigo Vigo Spain
Research Department Peter MacCallum Cancer Center Melbourne Victoria Australia
Research Oncology Guy's Hospital King's College London London UK
Sackler Faculty of Medicine Tel Aviv University Ramat Aviv Israel
Saw Swee Hock School of Public Health National University of Singapore Singapore Singapore
School of Life Sciences University of Westminster London UK
School of Medicine University of Western Australia Perth Western Australia Australia
School of Public Health China Medical University Taichung Taiwan
School of Public Health Curtin University Perth Western Australia Australia
Service de Génétique Institut Curie Paris France
Sir Peter MacCallum Department of Oncology The University of Melbourne Melbourne Victoria Australia
SOD Genetica Molecolare University Hospital Pisa Italy
Southampton Clinical Trials Unit Faculty of Medicine University of Southampton Southampton UK
State Research Institute Centre for Innovative Medicine Vilnius Lithuania
Surgery School of Medicine National University of Ireland Galway Ireland
The Kinghorn Cancer Centre Garvan Institute of Medical Research Sydney New South Wales Australia
The Suzanne Levy Gertner Oncogenetics Unit Chaim Sheba Medical Center Ramat Gan Israel
The University of Chicago Pritzker School of Medicine Chicago IL USA
Translational Cancer Research Area University of Eastern Finland Kuopio Finland
U O Anatomia Patologica Ospedale di Circolo ASST Settelaghi Varese Italy
UK Dementia Research Institute Imperial College London London UK
Université Paris Descartes Paris France
University of New Mexico Health Sciences Center University of New Mexico Albuquerque NM USA
VIB Center for Cancer Biology VIB Leuven Belgium
Westmead Institute for Medical Research University of Sydney Sydney New South Wales Australia
Women's College Research Institute University of Toronto Toronto Ontario Canada
Zilber School of Public Health University of Wisconsin Milwaukee Milwaukee WI USA
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