The complete mitochondrial transcript of the red tail loach Yasuhikotakia modesta as assembled from RNAseq (Teleostei: Botiidae)

. 2017 Feb 02 ; 2 (1) : 46-47. [epub] 20170202

Status PubMed-not-MEDLINE Jazyk angličtina Země Anglie, Velká Británie Médium electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid33490436

Here, we present the first complete mitochondrial genome of the Red Tailed Loach Yasuhikotakia modesta (Teleostei: Botiidae) from Thailand, assembled from next-generation transcriptome sequencing data. The assembled transcript corresponds to the full length mitochondrial genome of Y. modesta, which measured 16,865 bp in length, and contained 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. A slight A + T bias was observed in the mitogenome of Y. modesta with an overall base composition of 32.2% A, 25.8% T, 26.4% C, and 15.4% G, and a GC content of 41.8%. The gene arrangement was identical to that of previously described loach mitogenomes.

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Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF.. 2012. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet E. 7:332–336. PubMed

Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540–552. PubMed

Gao J, Schatton D, Martinelli P, Hansen H, Pla-Martin D, Barth E, Becker C, Altmueller J, Frommolt P, Sardiello M, Rugarli EI.. 2014. CLUH regulates mitochondrial biogenesis by binding mRNAs of nuclear-encoded mitochondrial proteins. J Cell Biol. 207:213–223. PubMed PMC

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O.. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307–321. PubMed

Nalbant TT. 2002. Sixty million years of evolution. Part one: family Botiidae (Pisces: Ostariophysi: Cobitoidea). Trav Mus Natl Hist Nat Grigore Antipa. 44:309–333.

Šlechtová V, Bohlen J, Freyhof J, Ráb P.. 2006. Molecular phylogeny of the Southeast Asian freshwater fish family Botiidae (Teleostei: Cobitoidea) and the origin of polyploidy in their evolution. Mol Phylogenet Evol. 39:529–541. PubMed

Tang Q, Huang Y, Wang J, Huang J, Wang Z, Peng Z.. 2013. The complete mitochondrial genome sequence of PubMed

Wang J, Tang Q, Wang Z, Zhang Y, Wu Q, Peng Z.. 2012. The complete mitogenome sequence of a cave loach PubMed

Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, Huang W, He G, Gu S, Li S, Zhou X.. 2014. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics. 30:1660–1666. PubMed

Yu P, Wei M, Yang Q, Yang Y, Wan Q.. 2016. The Complete Mitochondrial Genome of PubMed

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