The chemical compound 'Heatin' stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1-subfamily of nitrilases

. 2021 Jun ; 106 (6) : 1523-1540. [epub] 20210506

Jazyk angličtina Země Velká Británie, Anglie Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid33768644

Grantová podpora
616449 H2020 European Research Council
258413 H2020 European Research Council
Swedish Research Council
831.13.002 Netherlands Organisation for Scientific research (NWO)
INST 20876/127-1 Deutsche Forschungsgemeinschaft (DFG)
BB/R017913/1 BBSRC
BB/S003193/1 BBSRC
Swedish Metabolomics Centre for the Use of Instrumentation
Knut and Alice Wallenberg Foundation (KAW)
CZ.02.1.01/0.0/0.0/16_019/0000827 Ministry of Education Youth and Sports of the Czech Republic
Swedish Foundation for Strategic Research

Temperature passively affects biological processes involved in plant growth. Therefore, it is challenging to study the dedicated temperature signalling pathways that orchestrate thermomorphogenesis, a suite of elongation growth-based adaptations that enhance leaf-cooling capacity. We screened a chemical library for compounds that restored hypocotyl elongation in the pif4-2-deficient mutant background at warm temperature conditions in Arabidopsis thaliana to identify modulators of thermomorphogenesis. The small aromatic compound 'Heatin', containing 1-iminomethyl-2-naphthol as a pharmacophore, was selected as an enhancer of elongation growth. We show that ARABIDOPSIS ALDEHYDE OXIDASES redundantly contribute to Heatin-mediated hypocotyl elongation. Following a chemical proteomics approach, the members of the NITRILASE1-subfamily of auxin biosynthesis enzymes were identified among the molecular targets of Heatin. Our data reveal that nitrilases are involved in promotion of hypocotyl elongation in response to high temperature and Heatin-mediated hypocotyl elongation requires the NITRILASE1-subfamily members, NIT1 and NIT2. Heatin inhibits NIT1-subfamily enzymatic activity in vitro and the application of Heatin accordingly results in the accumulation of NIT1-subfamily substrate indole-3-acetonitrile in vivo. However, levels of the NIT1-subfamily product, bioactive auxin (indole-3-acetic acid), were also significantly increased. It is likely that the stimulation of hypocotyl elongation by Heatin might be independent of its observed interaction with NITRILASE1-subfamily members. However, nitrilases may contribute to the Heatin response by stimulating indole-3-acetic acid biosynthesis in an indirect way. Heatin and its functional analogues present novel chemical entities for studying auxin biology.

Bejo Zaden B 5 Trambaan 1 Warmenhuizen 1749 CZ the Netherlands

Biological Chemistry Group Sylvius Laboratories Institute of Biology Leiden Leiden University Sylviusweg 72 Leiden 2333 BE the Netherlands

Bioscience Wageningen University and Research Droevendaalsesteeg 1 Wageningen 6708 PB the Netherlands

Chemische Biologie Zentrum für Medizinische Biotechnologie Fakultät für Biologie Universität Duisburg Essen Universitätsstr 2 Essen 45117 Germany

Department of Chemical Biology and Drug Discovery Utrecht Institute for Pharmaceutical Sciences University Utrecht Universiteitsweg 99 Utrecht 3584 CG the Netherlands

Department of Molecular Genetics and Physiology of Plants Faculty of Biology and Biotechnology Universitätsstraße 150 Bochum 44801 Germany

Keygene Agro Business Park 90 Wageningen 6708 PW the Netherlands

Laboratory of Growth Regulators The Czech Academy of Sciences and Faculty of Science Institute of Experimental Botany Palacký University Šlechtitelů 27 Olomouc 78371 Czech Republic

Molecular Plant Physiology Institute of Environmental Biology Utrecht University Padualaan 8 Utrecht 3584 CH the Netherlands

Plant Chemetics Laboratory Department of Plant Sciences University of Oxford South Parks Road Oxford OX1 3RB UK

Plant Microbe Interactions Institute of Environmental Biology Utrecht University Padualaan 8 Utrecht 3584 CH the Netherlands

Theoretical Biology and Bioinformatics Institute of Biodynamics and Biocomplexity Utrecht University Padualaan 8 Utrecht 3584 CH the Netherlands

Umeå Plant Science Centre Department of Forest Genetics and Plant Physiology Swedish University of Agricultural Sciences Umea SE 901 83 Sweden

Zobrazit více v PubMed

Alonso, J.M., Stepanova, A.N., Leisse, T.J., Kim, C.J., Chen, H., Shinn, P. PubMed

Anders, S. & Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biology, 11, R106. PubMed PMC

Anders, S., Pyl, P.T. & Huber, W. (2015) HTSeq—a Python framework to work with high‐throughput sequencing data. Bioinformatics, 31, 166–169. PubMed PMC

Boonsirichai, K., Guan, C., Chen, R. & Masson, P.H. (2002) ROOT GRAVITROPISM: an experimental tool to investigate basic cellular and molecular processes underlying mechanosensing and signal transmission in plants. Annual Review of Plant Biology, 53, 421–447. PubMed

Böttcher, C., Chapman, A., Fellermeier, F., Choudhary, M., Scheel, D. & Glawischnig, E. (2014) The biosynthetic pathway of Indole‐3‐carbaldehyde and Indole‐3‐carboxylic acid derivatives in Arabidopsis. Plant Physiology, 165, 841–853. PubMed PMC

Calderón Villalobos, L.I.A., Lee, S., De Oliveira, C. PubMed PMC

Casal, J.J. & Balasubramanian, S. (2019) Thermomorphogenesis. Annual Review of Plant Biology, 70, 321–346. PubMed

Chapman, E.J., Greenham, K., Castillejo, C., Sartor, R., Bialy, A., Sun, T. PubMed PMC

Chen, J.‐G., Pandey, S., Huang, J., Alonso, J.M., Ecker, J.R., Assmann, S.M. PubMed PMC

Chen, J.‐G., Willard, F.S., Huang, J., Liang, J., Chasse, S.A., Jones, A.M. PubMed

Cheng, Y., Dai, X. & Zhao, Y. (2004) AtCAND1, A HEAT‐repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiology, 135, 1020–1026. PubMed PMC

Chung, B.Y.W., Balcerowicz, M., Di Antonio, M., Jaeger, K.E., Geng, F., Franaszek, K. PubMed PMC

Cong, F., Cheung, A.K. & Huang, S.‐M.‐A. (2012) Chemical genetics–based target identification in drug discovery. Annual Review of Pharmacology and Toxicology, 52, 57–78. PubMed

Covington, M.F. & Harmer, S.L. (2007) The circadian clock regulates auxin signaling and responses in Arabidopsis. PLoS Biology, 5, e222. PubMed PMC

Cox, J., Hein, M.Y., Luber, C.A., Paron, I., Nagaraj, N. & Mann, M. (2014) Accurate proteome‐wide label‐free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Molecular & Cellular Proteomics: MCP, 13, 2513–2526. PubMed PMC

Cox, J., Neuhauser, N., Michalski, A., Scheltema, R.A., Olsen, J.V. & Mann, M. (2011) Andromeda: a peptide search engine integrated into the Maxquant environment. Journal of Proteome Research, 10, 1794–1805. PubMed

Crawford, A.J., McLachlan, D.H., Hetherington, A.M. & Franklin, K.A. (2012) High temperature exposure increases plant cooling capacity. Current Biology, 22, R396–R397. PubMed

Cutler, S. & McCourt, P. (2005) Dude, where’s my phenotype? Dealing with redundancy in signaling networks. Plant Physiology, 138, 558–559. PubMed PMC

Dai, X., Hayashi, K., Nozaki, H., Cheng, Y. & Zhao, Y. (2005) Genetic and chemical analyses of the action mechanisms of sirtinol in Arabidopsis. Proceedings of the National Academy of Sciences of United States of America, 102, 3129–3134. PubMed PMC

Dejonghe, W. & Russinova, E. (2017) Plant chemical genetics: from phenotype‐based screens to synthetic biology. Plant Physiology, 174, 5–20. PubMed PMC

del Pozo, J.C., Dharmasiri, S., Hellmann, H., Walker, L., Gray, W.M. & Estelle, M. (2002) AXR1‐ECR1–dependent conjugation of RUB1 to the Arabidopsis cullin AtCUL1 is required for auxin response. The Plant Cell, 14, 421–433. PubMed PMC

del Pozo, J.C. & Estelle, M. (1999) The Arabidopsis cullin AtCUL1 is modified by the ubiquitin‐related protein RUB1. Proceedings of the National Academy of Sciences of United States of America, 96, 15342–15347. PubMed PMC

Drakakaki, G., Robert, S., Szatmari, A.‐M., Brown, M.Q., Nagawa, S., Van Damme, D. PubMed PMC

Estelle, M.A. & Somerville, C. (1987) Auxin‐resistant mutants of

Fiorucci, A.‐S., Galvão, V.C., Ince, Y.Ç., Boccaccini, A., Goyal, A., Allenbach Petrolati, L. PubMed PMC

Franklin, K.A., Lee, S.H., Patel, D., Kumar, S.V., Spartz, A.K., Gu, C. PubMed PMC

Futamura, Y., Muroi, M. & Osada, H. (2013) Target identification of small molecules based on chemical biology approaches. Molecular BioSystems, 9, 897–914. PubMed

Gao, Y., Zeng, Q., Guo, J., Cheng, J., Ellis, B.E. & Chen, J.‐G. (2007) Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis. The Plant Journal, 52, 1001–1013. PubMed

Garrido‐Vargas, F., Godoy, T., Tejos, R. & O’Brien, J.A. (2020) Overexpression of the auxin receptor AFB3 in Arabidopsis results in salt stress resistance and the modulation of NAC4 and SZF1. International Journal of Molecular Sciences, 21, 9528. PubMed PMC

Gleason, C., Foley, R.C. & Singh, K.B. (2011) Mutant analysis in Arabidopsis provides insight into the molecular mode of action of the auxinic herbicide Dicamba. PLoS One, 6, e17245. PubMed PMC

González‐Guzmán, M., Abia, D., Salinas, J., Serrano, R. & Rodríguez, P.L. (2004) Two new alleles of the abscisic aldehyde oxidase 3 gene reveal its role in abscisic acid biosynthesis in seeds. Plant Physiology, 135, 325–333. PubMed PMC

Gray, W.M., Östin, A., Sandberg, G., Romano, C.P. & Estelle, M. (1998) High temperature promotes auxin‐mediated hypocotyl elongation in Arabidopsis. Proceedings of the National Academy of Sciences of United States of America, 95, 7197–7202. PubMed PMC

Grozinger, C.M., Chao, E.D., Blackwell, H.E., Moazed, D. & Schreiber, S.L. (2001) Identification of a class of small molecule inhibitors of the Sirtuin family of NAD‐dependent deacetylases by phenotypic screening. Journal of Biological Chemistry, 276, 38837–38843. PubMed

Guo, J., Zeng, Q., Emami, M., Ellis, B.E. & Chen, J.‐G. (2008) The GCR2 gene family is not required for ABA control of seed germination and early seedling development in Arabidopsis. PLoS One, 3, e2982. PubMed PMC

Hicks, G.R. & Raikhel, N.V. (2014) Plant chemical biology: are we meeting the promise? Frontiers in Plant Science, 5, 455. PubMed PMC

Ibañez, C., Poeschl, Y., Peterson, T., Bellstädt, J., Denk, K., Gogol‐Döring, A. PubMed PMC

Ibdah, M., Chen, Y.‐T., Wilkerson, C.G. & Pichersky, E. (2009) An aldehyde oxidase in developing seeds of Arabidopsis converts benzaldehyde to benzoic acid. Plant Physiology, 150, 416–423. PubMed PMC

Jones, A.M., Ecker, J.R. & Chen, J.‐G. (2003) A reevaluation of the role of the heterotrimeric G protein in coupling light responses in Arabidopsis. Plant Physiology, 131, 1623–1627. PubMed PMC

Jung, J.‐H., Barbosa, A.D., Hutin, S., Kumita, J.R., Gao, M., Derwort, D. PubMed

Jung, J.‐H., Domijan, M., Klose, C., Biswas, S., Ezer, D. & Gao, M. PubMed

Kaschani, F. & van der Hoorn, R. (2007) Small molecule approaches in plants. Proteomics Genomics, 11, 88–98. PubMed

Katz, E., Nisani, S., Yadav, B.S., Woldemariam, M.G., Shai, B., Obolski, U. PubMed

Klepikova, A.V., Kasianov, A.S., Gerasimov, E.S., Logacheva, M.D. & Penin, A.A. (2016) A high resolution map of the PubMed

Legris, M., Klose, C., Burgie, E.S., Rojas, C.C., Neme, M., Hiltbrunner, A. PubMed

Lehmann, T., Janowitz, T., Sánchez‐Parra, B., Alonso, M.‐M.‐P., Trompetter, I., Piotrowski, M. PubMed PMC

Leivar, P., Monte, E., Al‐Sady, B., Carle, C., Storer, A., Alonso, J.M. PubMed PMC

Li, J., Dai, X. & Zhao, Y. (2006) A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiology, 140, 899–908. PubMed PMC

Marlo, J.E., Niswender, C.M., Days, E.L., Bridges, T.M., Xiang, Y., Rodriguez, A.L. PubMed PMC

Martins, S., Montiel‐Jorda, A., Cayrel, A., Huguet, S., Roux, C.‐P.‐L., Ljung, K. PubMed PMC

Mashiguchi, K., Tanaka, K., Sakai, T., Sugawara, S., Kawaide, H., Natsume, M. PubMed PMC

Michalski, A., Damoc, E., Lange, O., Denisov, E., Nolting, D., Müller, M. PubMed DOI PMC

Nagashima, A., Uehara, Y. & Sakai, T. (2008) The ABC subfamily B auxin transporter AtABCB19 is involved in the inhibitory effects of N‐1‐naphthyphthalamic acid on the phototropic and gravitropic responses of Arabidopsis hypocotyls. Plant and Cell Physiology, 49, 1250–1255. PubMed

Nishimura, T., Hayashi, K., Suzuki, H., Gyohda, A., Takaoka, C., Sakaguchi, Y. PubMed

Normanly, J., Grisafi, P., Fink, G.R. & Bartel, B. (1997) Arabidopsis mutants resistant to the auxin effects of indole‐3‐acetonitrile are defective in the nitrilase encoded by the NIT1 gene. The Plant Cell, 9, 1781–1790. PubMed PMC

Oh, E., Zhu, J.‐Y., Bai, M.‐Y., Arenhart, R.A., Sun, Y. & Wang, Z.‐Y. (2014) Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl S. McCormick, ed. eLife, 3, e03031. PubMed PMC

Okushima, Y., Overvoorde, P.J., Arima, K., Alonso, J.M., Chan, A., Chang, C. PubMed PMC

Olsen, J.V., de Godoy, L.M.F., Li, G., Macek, B., Mortensen, P., Pesch, R. PubMed

Paponov, I.A., Paponov, M., Teale, W., Menges, M., Chakrabortee, S., Murray, J.A.H. PubMed

Park, S.‐y., Fung, P., Nishimura, N., Jensen, D.r., Fujii, H., Zhao, Y. PubMed PMC

Park, Y.‐J., Lee, H.‐J., Gil, K.‐E., Kim, J.Y., Lee, J.H., Lee, H. PubMed PMC

Parry, G., Calderon‐Villalobos, L.I., Prigge, M., Peret, B., Dharmasiri, S., Itoh, H. PubMed PMC

Pěnčík, A., Casanova‐Sáez, R., Pilařová, V., Žukauskaitė, A., Pinto, R., Micol, J.L. PubMed PMC

Piotrowski, M. (2008) Primary or secondary? Versatile nitrilases in plant metabolism. Phytochemistry, 69, 2655–2667. PubMed

Piotrowski, M., Schönfelder, S. & Weiler, E.W. (2001) PubMed

Prigge, M.J., Greenham, K., Zhang, Y., Santner, A., Castillejo, C., Mutka, A.M. PubMed PMC

Quint, M., Delker, C., Franklin, K.A., Wigge, P.A., Halliday, K.J. & van Zanten, M. (2016) Molecular and genetic control of plant thermomorphogenesis. Nature Plants, 2, 15190. PubMed

Rakusová, H., Gallego‐Bartolomé, J., Vanstraelen, M., Robert, H.S., Alabadí, D., Blázquez, M.A. PubMed

Rappsilber, J., Ishihama, Y. & Mann, M. (2003) Stop and go extraction tips for matrix‐assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Analytical Chemistry, 75, 663–670. PubMed

Rittenberg, D. & Foster, G.L. (1940) A new procedure for quantitative analysis by isotope dilution, with application to the determination of amino acids and fatty acids. Journal of Biological Chemistry, 133, 737–744.

Ruegger, M., Dewey, E., Gray, W.M., Hobbie, L., Turner, J. & Estelle, M. (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast Grr1p. Genes & Development, 12, 198–207. PubMed PMC

Savaldi‐Goldstein, S., Baiga, T.J., Pojer, F. PubMed PMC

Seo, M., Akaba, S., Oritani, T., Delarue, M., Bellini, C., Caboche, M. PubMed PMC

Seo, M., Aoki, H., Koiwai, H., Kamiya, Y., Nambara, E. & Koshiba, T. (2004) Comparative studies on the Arabidopsis Aldehyde Oxidase (AAO) gene family revealed a major role of AAO3 in ABA biosynthesis in seeds. Plant and Cell Physiology, 45, 1694–1703. PubMed

Shimizu‐Mitao, Y. & Kakimoto, T. (2014) Auxin sensitivities of all Arabidopsis Aux/IAAs for degradation in the presence of every TIR1/AFB. Plant and Cell Physiology, 55, 1450–1459. PubMed

Sorin, C., Bussell, J.D., Camus, I., Ljung, K., Kowalczyk, M., Geiss, G. PubMed PMC

Sugawara, S., Hishiyama, S., Jikumaru, Y., Hanada, A., Nishimura, T., Koshiba, T. PubMed PMC

Sun, J., Qi, L., Li, Y., Chu, J. & Li, C. (2012) PIF4–mediated activation of PubMed PMC

Teschner, J., Lachmann, N., Schulze, J., Geisler, M., Selbach, K., Santamaria‐Araujo, J. PubMed PMC

Tian, Q., Uhlir, N.J. & Reed, J.W. (2002) Arabidopsis SHY2/IAA3 inhibits auxin‐regulated gene expression. The Plant Cell, 14, 301–319. PubMed PMC

Tóth, R. & van der Hoorn, R.A.L. (2010) Emerging principles in plant chemical genetics. Trends in Plant Science, 15, 81–88. PubMed

Trapnell, C., Pachter, L. & Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA‐Seq. Bioinformatics, 25, 1105–1111. PubMed PMC

Trompetter . (2010) Untersuchungen zu den NIT1‐homologen. Bochum: Ruhr‐Universität.

Trusov, Y., Rookes, J.E., Tilbrook, K., Chakravorty, D., Mason, M.G., Anderson, D. PubMed PMC

Tyanova, S., Temu, T., Sinitcyn, P., Carlson, A., Hein, M.Y., Geiger, T. PubMed

Ullah, H., Chen, J.‐G., Temple, B., Boyes, D.C., Alonso, J.M., Davis, K.R. PubMed PMC

van der Woude, L.C., Perrella, G., Snoek, B.L. PubMed PMC

Van Slyke, D.D. & Hiller, A. (1933) Determination of ammonia in blood. Journal of Biological Chemistry, 102, 499–504.

Vidal, E.A., Araus, V., Lu, C., Parry, G., Green, P.J., Coruzzi, G.M. PubMed PMC

Vik, D., Mitarai, N., Wulff, N., Halkier, B.A. & Burow, M. (2018) Dynamic modeling of indole glucosinolate hydrolysis and its impact on auxin signaling. Frontiers in Plant Science, 9, 550. PubMed PMC

Vizcaíno, J.A., Csordas, A., Del‐Toro, N., Dianes, J.A., Griss, J., Lavidas, I. PubMed PMC

Vorwerk, S., Biernacki, S., Hillebrand, H., Janzik, I., Müller, A., Weiler, E.W. PubMed

Vu, L.D., Gevaert, K. & De Smet, I. (2019) Feeling the heat: Searching for plant thermosensors. Trends in Plant Science, 24, 210–219. PubMed

Zhao, Y. (2012) Auxin biosynthesis: a simple two‐step pathway converts tryptophan to indole‐3‐acetic acid in plants. Molecular Plant, 5, 334–338. PubMed PMC

Zhao, Y., Dai, X., Blackwell, H.E., Schreiber, S.L. & Chory, J. (2003) SIR1, an upstream component in auxin signaling identified by chemical genetics. Science, 301, 1107–1110. PubMed

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