When will taxonomic saturation be achieved? A case study in Nunduva and Kyrtuthrix (Rivulariaceae, Cyanobacteria)
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
PubMed
34289115
DOI
10.1111/jpy.13201
Knihovny.cz E-zdroje
- Klíčová slova
- 16S-23S ITS, Nostocales, Rivulariaceae, cyanobacteria, intertidal, marine,
- MeSH
- fylogeneze MeSH
- RNA ribozomální 16S MeSH
- sinice * genetika MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Mexiko MeSH
- Názvy látek
- RNA ribozomální 16S MeSH
A number of heterocytous, mat-forming, tapering cyanobacteria in Rivulariaceae have recently been observed in both the Atlantic and Pacific coasts in the rocky intertidal and supratidal zones. These belong to the genera Nunduva, Kyrtuthrix, and Phyllonema and have been the subject of several recent studies. Herein, two new species of Nunduva (N. komarkovae and N. sanagustinensis) and two new species of Kyrtuthrix (K. munecosensis and K. totonaca) are characterized and described from the coasts of Mexico. Genetic separation based on the 16S-23S ITS region was pronounced (>10% in all comparisons). Morphological differences between all existing species in these two genera were also observed, but the group is morphologically complex, and these taxa are considered pseudocryptic. Nunduva and Kyrtuthrix remain morphologically and phylogenetically separate even with the addition of new species. However, how long will this remain the case? Many new genera and species of cyanobacteria have recently been described. Will the taxonomy of cyanobacteria eventually become saturated? Will we start to see multiple populations for the same cryptic species, or will future taxonomists collapse multiple species into fewer species, or multiple genera into single genera. The description of even more Nunduva and Kyrtuthrix species causes us to pause and evaluate the future of cyanobacterial taxonomy. These same questions are faced by algal taxonomists studying other phyla, and the resolution may ultimately be similar.
Zobrazit více v PubMed
Aguiar, R., Fiore, M. F., Franco, M. W., Ventrella, M. C., Lorenzi, A. S., Vanetti, C. A. & Alfenas, A. C. 2008. A novel epiphytic cyanobacterial species from the genus Brasilonema causing damage to Eucalyptus leaves. J. Phycol. 44:1322-34.
Ahn, A. C., Meier-Kolthoff, J. P., Overmars, L., Richter, M., Woyke, T., Sorokin, D. & Muyzer, G. 2017. Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS ONE 12:e0173517.
Alvarenga, D. O., Fiore, M. F. & Varani, A. M. 2017. A metagenomics approach to cyanobacterial genomics. Front. Microbiol. 8:809.
Alvarenga, D., Rigonato, J., Branco, L., Melo, I. & Fiore, M. 2016. Phyllonema aviceniicola gen. nov., sp. nov. and Foliisarcina bertiogensis gen. nov., sp. nov., epiphyllic cyanobacteria associated with Avicennia schaueriana leaves. Int. J. Syst. Evol. Microbiol. 66:689-700.
de Alvarenga, L. V., Vieira Vaz, M. G. M., Genuário, D. B., Esteves-Ferreira, A. A., Almeida, A. V. M., de Castro, N. V., Lizieri, C., Souza, J. J. L. L., Schaefer, C. E. G. R., Nunes-Nesi, A. & Araújo, W. L. 2018. Extending the ecological distribution of Desmonostoc genus: proposal of Desmonostoc salinum sp. nov., a novel Cyanobacteria from a saline-alkaline lake. Int. J. Syst. Evol. Microbiol. 68:2770-82.
Amin, A. K. M. R., Tanaka, M., Al-Saari, N., Feng, G., Mino, S., Ogura, Y., Hayashi, T. et al. 2017. Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan. Syst. Appl. Microbiol. 40:290-6.
Bagchi, S. N., Dubey, N. & Singh, P. 2017. Phylogenetically distant clade of Nostoc-like taxa with the description of Aliinostoc gen. nov. and Aliinostoc morphoplasticum sp. nov. Int. J. Syst. Evol. Microbiol. 67:3329-38.
Becerra-Absalón, I., Johansen, J. R., Munoz-Martin, M. A. & Montejano, G. 2018. Chroakolemma gen. nov. (Leptolyngbyaceae, Cyanobacteria) from soil biocrusts in the semi-desert central region of Mexico. Phytotaxa 367:201-18.
Becerra-Absalón, I., Johansen, J. R., Osorio-Santos, K. & Montejano, G. 2020. Two new Oculatella (Oculatellaceae, Cyanobacteria) species in soil crusts from tropical semi-arid uplands of México. Fottea 20:160-70.
Becerra-Absalón, I., Rodarte, B., Osorio, K., Alba-Lois, L., Segal-Kischinevzky, C. & Montejano, G. 2013. A new species of Brasilonema (Scytonemataceae, Cyanoprokaryota) from Tolantongo, Hidalgo, Central Mexico. Fottea 13:25-38.
Bohunická, M., Pietrasiak, N., Johansen, J. R., Berrendero-Gomez, E., Hauer, T., Gaysina, L. & Lukešová, A. 2015. Roholtiella, gen. nov. (Nostocales, Cyanobacteria) - a tapering and branching member of the Nostocaceae (Cyanobacteria). Phytotaxa 197:84-103.
Bourelly, P. 1985. Les Algues d'Eau Douce. III. Les Algues Bleues et Rouges, les Eugléniens, Peridiniens et Cryptomonadines. 2nd ed. N. Boubée & Cie, Paris, France, 512 pp.
Boyer, S. L., Flechtner, V. F. & Johansen, J. R. 2001. Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol. Biol. Evol. 18:1057-69.
Boyer, S. L., Johansen, J. R., Flechtner, V. R. & Howard, G. L. 2002. Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region. J. Phycol. 38:1222-35.
Brito, Â., Ramos, V., Seabra, R., Santos, A., Santos, C. L., Lopo, M., Ferreira, S. et al. 2012. Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: a polyphasic study. Syst. App. Microbiol. 35:110-9.
Cai, F., Chen, Y., Zhu, M., Li, X. & Li, R. 2017. Desertifilum salkalinema sp. nov. (Oscillatoriales, Cyanobacteria) from an alkaline pool in China. Phytotaxa 292:262-70.
Cai, F. & Li, R. 2020b. Purpureonostoc, a new name for a recently described genus of Nostoc-like cyanobacteria. Fottea 20:111.
Cai, F., Li, X., Yang, Y., Jia, N., Huo, D. & Li, R. 2018a. Compactonostoc shennongjiaensis gen. & sp. nov. (Nostocales, Cyanobacteria) from a wet rocky wall in China. Phycologia 58:200-10.
Cai, F., Li, X., Geng, R., Peng, X. & Li, R. 2019. Phylogenetically distant clade of Nostoc-like taxa with the description of Minunostoc gen. nov. and Minunostoc cylindricum sp. nov. Fottea 19:13-24.
Cai, F., Peng, X. & Li, R. 2020c. Violetonostoc minutum gen et sp. nov. (Nostocales, Cyanobacteria) from a rocky substrate in China. Algae Int. J. Algal Res. 35:1-15.
Cai, F., Wang, Y., Yu, G., Wang, J., Peng, X. & Li, R. 2020a. Proposal of Purpurea gen. nov. (Nostocales, Cyanobacteria), a novel cyanobacterial genus from wet soil samples in Tibet, China. Fottea 20:86-97.
Cai, F., Yang, Y., Wen, Q. & Li, R. 2018b. Desmonostoc danxiaense sp. nov. (Nostocales, Cyanobacteria) from Danxia mountain in China based on polyphasic approach. Phytotaxa 367:233-44.
Casamatta, D. A., Gomez, S. R. & Johansen, J. R. 2006. Rexia erecta gen. et sp. nov. and Capsosira lowei sp. nov., two newly described cyanobacterial taxa from the Great Smoky Mountains National Park (USA). Hydrobiologia 561:13-26.
Casamatta, D. A., Villanueva, C. D., Garvey, A. D., Stocks, H. S., Vaccarino, M., Dvořák, P., Hašler, P. & Johansen, J. R. 2020. Reptodigitus chapmanii (Nostocales, Hapalosiphonaceae) gen. nov.: a unique nostocalean (Cyanobacteria) genus based on a polyphasic approach. J. Phycol. 56:425-36.
Castenholz, R. W. 2001. Bergey's manual of systematic bacteriology. In Cyanobacteria, P. B. X., Bacteria, O. P., In Boone, D. R., Castenholz, R. W. & Garrity, G. M. [Eds.] Volume One: The Archaea and the Deeply Branching Phototrophic Bacteria. 2nd ed. Springer, New York, pp. 473-599.
Cellamare, M., Duval, C., Drelin, Y., Djediat, C., Touibi, N., Agogué, H., Leboulanger, C., Ader, M. & Bernard, C. 2018. Characterization of phototrophic microorganisms and description of new cyanobacteria isolated from the saline-alkaline crater-lake Dziani Dzaha (Mayotte, Indian Ocean). FEMS Microbiol. Ecol. 94:1-25.
Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D. R., da Costa, M. S., Rooney, A. P., Yi, H., Xu, X. W., De Meyer, S. & Trujillo, M. E. 2018. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int. J. Syst. Evol. 68:461-6.
Cornut, L., Bertrand, A. R., Hanikenne, M., Javaux, E. J., Wilmotte, A. & Baurain, D. 2018. Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures. Microb. Genom. 2018:1-15.
Coutinho, F., Dutilh, B. E., Thompson, C. & Thompson, F. 2016b. Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features. Arch. Microbiol. 198:973-86.
Coutinho, F., Tschoeke, D. A., Thompson, F. & Thompson, C. 2016a. Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus. Peer J. 4:e1522.
Dadheech, P., Abed, R. M. M., Mahmoud, H., Mohan, M. K. & Krientitz, L. 2012. Polyphasic characterization of cyanobacteria isolated from desert crusts, and the description of Desertifilum tharense gen. et sp. nov. (Oscillatoriales). Phycologia 51:260-70.
Dadheech, P. K., Mahmoud, H. & Krienitz, L. 2014. Desertifilum fontinale sp. nov. (Oscillatoriales, Cyanobacteria) from a warm spring in East Africa, based on conventional and molecular studies. Fottea 14:129-40.
Díaz-Tapia, P., Ly, M. & Verbruggen, H. 2020. Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): molecular species delimitation and morphometric analyses. Mol. Phylogen. Evol. 152:106909.
Díaz-Tapia, P., Maggs, C. A., West, J. A. & Verbruggen, H. 2017. Analysis of chloroplast genomes and a supermatrix inform reclassification of the Rhodomelaceae (Rhodophyta). J. Phycol. 54:765-6.
Drouet, F. 1968. Revision of the classification of the Oscillatoriaceae. Monogr. Acad. Nat. Sci. Philad. 15:1-370.
Drouet, F. 1973. Revision of the Nostocaceae with Cylindrical Trichomes. Haffner Press, New York, 292 pp.
Drouet, F. 1978. Revision of the Nostocaceae with constricted trichomes. Nova Hedwigia Beih. 57:1-258.
Drouet, F. 1981. Revision of the Stigonemataceae with a summary of the classification of the blue-green algae. Nova Hedwigia Beih. 66:1-221.
Drummond, A. J., Ho, S. Y. W., Philips, M. J. & Rambaut, A. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4:e88.
Dvořak, P., Jahodářová, E., Hašler, P., Gusev, E. & Poulíčková, A. 2015. A new tropical cyanobacterium Pinocchia polymorpha gen. et sp. nov. derived from the genus Pseudanabaena. Fottea 15:113-20.
Engene, N., Paul, V. J., Byrum, T., Gerwick, W. H., Thor, A. & Ellisman, M. H. 2013. Five chemically rich species of tropical marine cyanobacteria of the genus Okeania gen. nov. (Oscillatoriales, Cyanoprokaryota). J. Phycol. 49:1095-106.
Engene, N., Rottacker, E. C., Kaštovský, J., Byrum, T., Choi, H., Ellisman, M. H., Komárek, J. & Gerwick, W. H. 2012. Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites. Int. J. Syst. Evol. Microbiol. 62:1171-8.
Ercegovic, A. 1929. Sur quelques nouveaux types des Cyanophycées lithophytes de la côte adriatique. Archiv für Protistenkunde. 66:164-74.
Erwin, P. M. & Thacker, R. W. 2008. Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts. Mol. Ecol. 17:2937-47.
Fawley, M. W., Fawley, K. P. & Owen, H. A. 2005. Diversity and ecology of small coccoid green algae from Lake Itasca, Minnesota, USA, including Meyerella planktonica gen. et sp. nov. Phycologia 44:35-48.
Fawley, M. W., Fawley, K. P. & Hegewald, E. 2011. Taxonomy of Desmodesmus serratus Chlorophyceae, Chlorophyta) and related taxa on the basis of morphological and DNA sequence data. Phycologia 50:23-56.
Fiore, M. F., Sant'Anna, C. L., Azevedo, M. T. P., Komárek, J., Kaštovský, J., Sulek, J. & Lorenzi, A. 2007. The cyanobacterial genus Brasilonema gen. nov., a molecular and phenotypic evaluation. J. Phycol. 43:789-98.
Flechtner, V. R., Boyer, S. L., Johansen, J. R. & DeNoble, M. L. 2002. Spirirestris rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils. Nova Hedwigia 74:1-24.
Frémy, P. 1934. Les Cyanophycees des Cotes d'Éurope. Mem. Soc. Nat. Sci. Nat. Math. Cherbourg 41:1-236.
Fučíková, K., Flechtner, V. R. & Lewis, L. A. 2012. Revision of the genus Bracteacoccus Tereg (Chlorophyceae, Chlorophyta) based on a phylogenetic approach. Nova Hedwigia 96:15-59.
Geitler, L. 1932. Cyanophyceae. In Rabenhorst's Kryptogamenflora von Deutschland, Österreich und der Schweiz 14:1-1196. Reprint by Koeltz Scientific Books, Königstein, Germany.
Gelman, A. & Rubin, D. B. 1992. Inference from iterative simulation using multiple sequences. Stat. Sci. 7:157-511.
González-Resendiz, L., Johansen, J. R., Alba-Lois, L., Segal-Kischinevzky, C., Escobar-Sánchez, V., Jímenez García, L. F., Hauer, T. & León-Tejera, H. 2018a. Nunduva, a new marine genus of Rivulariaceae (Nostocales, Cyanobacteria) from marine rocky shores. Fottea 18:86-105.
González-Resendiz, L., Johansen, J. R., Escobar-Sánchez, V., Segal-Kischinevzky, C., Jiménez-Gracía, F., Jímenez García, L. F. & León-Tejera, H. 2018b. Two new species of Phyllonema (Rivulariaceae, Cyanobacteria) with an emendation of the genus. J. Phycol. 54:638-52.
González-Resendiz, L., León-Tejera, H. & Gold-Morgan, M. 2015. Morphological diversity of benthic Nostocales (Cyanoprokaryota/Cyanobacteria) from the tropical rocky shores of Huatulco region, Oaxaca, México. Phytotaxa 219:221-32.
Guiry, M. D. 2012. How many species of algae are there? J. Phycol. 48:1057-63.
Guiry, M. D. & Guiry, G. M. 2021. AlgaeBase. World-wide Electronic Publication. National University of Ireland, Galway, Ireland. https://www.algaebase.org; searched on 11 May 2021.
Hall, T. 1999. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-8.
Harke, M. J., Steffen, M. M., Gobler, C. J., Otten, T. G., Wilhelm, S. W., Wood, S. A. & Paerl, H. W. 2016. A review of the global ecology, genomics, and biogeography of the toxic cyanobacterium, Microcystis spp. Harmful Algae 54:4-20.
Hašler, P., Dvořák, P., Poulíčková, A. & Casamatta, D. A. 2014. A novel genus Ammassolinea gen. nov. (Cyanobacteria) isolated from sub-tropical epipelic hábitats. Fottea 14:241-8.
Henley, W. J., Hironaka, J. L., Guillou, L., Buchheim, M. A., Buchheim, J. A., Fawley, M. W. & Fawley, K. P. 2004. Phylogenetic analysis of the 'Nannochloris-like' algae and diagnoses of Picochlorum oklahomensis (Trebouxiophyceae, Chlorophyta). Phycologia 43:641-52.
Hentschke, G. S., Johansen, J. R., Pietrasiak, N., Fiore, M. F., Rigonato, J., Sant'Anna, C. L. & Komárek, J. 2016. Phylogenetic placement of Dapisostemon gen. nov. and Streptostemon, two tropical heterocytous genera (Cyanobacteria). Phytotaxa 245:129-43.
Hentschke, G. S., Johansen, J. R., Pietrasiak, N., Rigonato, J., Fiore, M. F. & SantAnna, C. L. 2017. Komarekiella atlantica gen. et sp. nov. (Nostocaceae, Cyanobacteria): a new subaerial taxon from the Atlantic Rainforest and Kauai, Hawaii. Fottea 17:178-90.
Hrouzek, P., Lukešová, A., Mareš, J. & Ventura, S. 2013. Description of the cyanobacterial genus Desmonostoc gen. nov. including D. muscorum comb. nov. as a distinct, phylogenetically coherent taxon related to the genus Nostoc. Fottea 13:201-13.
Jahodárová, E., Dvořak, P., Hašler, P. & Poulíčková, A. 2017. Revealing hidden diversity among tropical cyanobacteria: the new genus Onodrimia (Synechococcales, Cyanobacteria) described using the polyphasic approach. Phytotaxa 326:28-040.
Johansen, J. R., Bohunická, M., Lukešová, A., Hrčková, K., Vaccarino, M. A. & Chesarino, N. M. 2014. Morphological and molecular characterization within 26 strains of the genus Cylindrospermum (Nostocaceae, Cyanobacteria), with descriptions of three new species. J. Phycol. 50:187-202.
Johansen, J. R. & Casamatta, D. A. 2005. Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algol. Stud. 116:71-93.
Johansen, J. R., Mareš, J., Pietrasiak, N., Bohunická, M., Zima, J., Štenclová, L. & Hauer, T. 2017. Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria). PLoS ONE 12:e0186393.
Joosten, A. M. T. 2006. Flora of the Bluegreen Algae of the Netherlands, Volume 1: The Non-Filamentous Species of Inland Waters. KNNV Uitgeverij, Utrecht, The Netherlands, 240 pp.
Jung, P., Mikhailyuk, T., Emrich, D., Baumann, K., Dultz, S. & Büdel, B. 2020. Shifting boundaries: ecological and geographical range extension based on three new species in the cyanobacterial genera Cyanocohniella, Oculatella, and Aliterella. J. Phycol. 56:1216-31.
Kabirnataj, S., Nematzadeh, G. A., Talebi, A. F., Tabatabaei, M. & Singh, P. 2018. Neowestiellopsis gen. nov, a new genus of true branched cyanobacteria with the description of Neowestiellopsis persica sp. nov. and Neowestiellopsis bilateralis sp. nov., isolated from Iran. Plant Syst. Evol. 304:501-10.
Kabirnataj, S., Nematzadeh, G. A., Talebi, A. F., Saraf, A., Suradkar, A., Tabatabaei, M. & Singh, P. 2020. Description of novel species of Allinostoc, Desikacharya and Desmonostoc using a polyphasic approach. Int. J. Syst. Evol. Microbiol. 70:3413-26.
Karnkowska-Ishikawa, A., Milanowski, R., Kwiatowski, J. & Zakryś, B. 2010. Taxonomy of Phacus oscillans (Euglenaceae) and its close relatives - balancing morphological and molecular features. J. Phycol. 46:172-82.
Kaštovský, J., Berrendero-Gomez, E., Hladil, J. & Johansen, J. R. 2014. Cyanocohniella calida gen. nov. et spec. nov. (Cyanobacteria: Aphanizomenonaceae) a new cyanobacterium from the thermal springs from Karlovy Vary, Czech Republic. Phytotaxa 181:279-92.
Kim, J. I., Shin, W. & Triemer, R. E. 2013. Phylogenetic reappraisal of the genus Monomorphina (Euglenophyceae) based on molecular and morphological data. J. Phycol. 49:82-91.
Kim, J. I., Triemer, R. E. & Shin, W. 2010. Multigene analyses of photosynthetic euglenoids and new family, Phacaceae (Euglenales). J. Phycol. 46:1278-87.
Komárek, J. 2013. Cyanoprokaryota. 3. Heterocytous genera. In Büdel, B., Gärtner, G., Krienitz, L. & Schagerl, M. [Eds.] Süswasserflora von Mitteleuropa, 19/3. Springer Spektrum Berlin, Heidelberg, Germany, pp. 1130.
Komárek, J., Kastovsky, J., Mareš, J. & Johansen, J. R. 2014. Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. Preslia 86:295-335.
Konstantinidis, K. T. & Tiedje, J. M. 2005. Towards a genome-based taxonomy for prokaryotes. J. Bacteriol. 187:6258-64.
Kosmala, S., Karnkowska-Ishikawa, A., Milanowski, R., Kwiatowski, J. & Zakryś, B. 2009. Phylogeny and systematics of Euglena (Euglenaceae) species with axial, stellate chloroplasts based on morphological and molecular data-new taxa, emended diagnoses, and epitypifications. J. Phycol. 45:464-81.
Kosmala, S., Milanowski, R., Brzóska, K., Pêkala, M., Kwiatowski, J. & Zakryś, B. 2007. Phylogeny and systematic of the genus Monomorphina (Euglenaceae) based on morphological and molecular data. J. Phycol. 43:171-85.
Lamprinou, V., Hernández-Mariné, M., Canals, T., Kormas, K., Economou-Amilli, A. & Pantazidou, A. 2011. Morphology and molecular evaluation of Iphinoe spelaeobios gen. nov., sp. nov. and Loriellopsis cavernicola gen. nov., sp. nov., two stigonematalean cyanobacteria from Greek and Spanish caves. Int. J. Syst. Evol. Microbiol. 61:2907-15.
Lamprinou, V., Skaraki, K., Kotoulas, G., Economou-Amilli, A. & Pantazidou, A. 2012. Toxopsis calypsus gen. nov., sp. nov. (Cyanobacteria, Nostocales) from cave 'Francthi', Peloponnese, Greece: a morphological and molecular evaluation. Int. J. Syst. Evol. Microbiol. 62:2870-7.
León-Tejera, H., González-Resendiz, L., Johansen, J. R., Segal-Kischinevzky, C., Escobar-Sánchez, V. & Alba-Lois, L. 2016. Phylogenetic position reevaluation of Kyrtuthrix and description of a new species K. huatulcensis from Mexico's Pacific coast. Phytotaxa 278:1-18.
León-Tejera, H., Montejano, G. & Gold-Morgan, M. 2005. Description of two interesting Scytonemaceae populations from supratidal biotopes of the Mexican Pacific. Algol. Stud. 117:307-13.
Lindstrom, S. C. 2008. Cryptic diversity, biogeography and genetic variation in Northeast Pacific species of Porphyra sensu lato (Bangiales, Rhodophyta). In Borowitzka, M. A., Critchley, A. T., Kraan, S., Peters, A., Sjøtun, K. & Notoya, M. [Eds.] Nineteenth International Seaweed Symposium. Developments in Applied Phycology, Vol. 2. Springer, Dordrecht, The Netherlands. https://doi.org/10.1007/978-1-4020-9619-8_60
Linton, E. W., Karnkowska-Ishikawa, A., Kim, J. I., Shin, W., Bennett, M., Kwiatowski, J., Zakrys, B. & Triemer, R. E. 2010. Reconstructing euglenoid evolutionary relationships using three genes: nuclear SSU and LSU, and chloroplast 16S rDNA sequences and the description of Euglenaria gen. nov. (Euglenophyta). Protist 161:603-19.
Lukešová, A., Johansen, J. R., Martin, M. P. & Casamatta, D. A. 2009. Aulosira bohemensis sp. nov.: further phylogenetic uncertainty at the base of the Nostocales (Cyanobacteria). Phycologia 48:118-29.
Lyra, G. M., Gurgel, C. F., Costa, E. D., de Jesus, P. B., Oliveira, M. C., Oliveira, E. C., Davis, C. C. & Nunes, J. M. 2016. Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data. J. Phycol. 52:997-1017.
Mai, T., Johansen, J. R., Pietrasiak, N., Bohunická, M. & Martin, M. P. 2018. Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species. Phytotaxa 325:1-59.
Mareš, J., Johansen, J. R., Hauer, T., Zima Jr, J., Ventura, S., Cuzman, O., Tiribilli, B. & Kaštovský, J. 2019. Taxonomic resolution of the genus Cyanothece (Chroococcales, Cyanobacteria), with a treatment on Gloeothece and three new genera, Crocosphaera, Rippkaea, and Zehria. J. Phycol. 55:578-610.
Marin, B., Palm, A., Klingberg, M. & Melkonian, M. 2003. Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure. Protist 154:99-145.
Miller, M., Schwartz, T., Pickett, B., He, S., Klem, E., Scheuermann, R., Passarotti, M., Kaufman, S. & O'Leary, M. A. 2015. A RESTful API for access to phylogenetic tools via the CIPRES Science Gateway. Evol. Bioinf. 11:43-8.
Milne, I., Lindner, D., Bayer, M., Husmeier, D., Mcguire, G., Marshall, D. F. & Wright, F. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25:126-7.
Miscoe, L. H., Johansen, J. R., Vaccarino, M. A., Pietrasiak, N. & Sherwood, A. R. 2016. Novel cyanobacteria from caves on Kauai, Hawaii. Bibl Phycol 120:75-152.
Mishler, B. D. & Theriot, E. C. 2000. The phylogenetic species concept (sensu Mishler and Theriot): monophyly, apomorphy, and phylogenetic species concepts. In Wheeler, Q. D. & Meier, R. [Eds.] Species concepts and phylogenetic theory, a debate. Columbia University Press, New York, pp. 44-54.
Müller, J., Müller, K., Neinhuis, C. & Quandt, D. 2010. PhyDE. Available from: www.Phyde.de/.
Neilan, B. A., Jacobs, D., Del Dot, T., Blackall, L. L., Hawkins, P. R., Cox, P. T. & Goodman, A. E. 1997. rRNA sequences and evolutionary relationships among toxic and nontoxic cyanobacteria of the genus Microcystis. Int. J. Syst. Bact. 47:693-7.
Neiva, J., Serrão, E. A., Anderson, L., Raimondi, P. T., Martins, N., Gouveia, L., Paulino, C. et al. 2017. Cryptic diversity, geographical endemism and allopolyploidy in NE Pacific seaweeds. BMC Evol. Biol. 17:30.
Nguyen, L. T. T., Cronberg, G., Moestrup, Ø. & Daugbjerg, N. 2013. Annamia toxica gen. et sp. nov. (Cyanobacteria), a freshwater cyanobacterium from Vietnam that produces microcystins: ultrastructure, toxicity and molecular phylogenetics. Phycologia 52:25-36.
Novis, P. M. & Visnovsky, G. 2011. Novel alpine algae from New Zealand: Cyanobacteria. Phytotaxa 22:1-24.
Osorio-Santos, K., Pietrasiak, N., Bohunická, M., Miscoe, L., Kovacik, L., Martin, M. P. & Johansen, J. R. 2014. Seven new species of Oculatella (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification. Eur. J. Phycol. 49:450-70.
Otsuka, S., Suda, S., Shibata, S., Oyaizu, H., Matsumoto, S. & Watanabe, M. M. 2001. A proposal for the unification of five species of the cyanobacterial genus Microcystis Kützing ex Lemmermann 1907 under the rules of the Bacteriological Code. Int. J. Syst. Evol. Microbiol. 51:873-9.
Pantazidou, A. 1991. Systematics and ecology of marine endolithic cyanophytes from limestone coasts of Greece. Dissertation thesis. University of Athens, Athens, 297 pp.
Pietrasiak, N., Mühlsteinová, R., Siegesmund, M. A. & Johansen, J. R. 2014. Phylogenetic placement of Symplocastrum (Phormidiaceae) with a new combination S. californicum and two new species: S. flechtnerae and S. torsivum. Phycologia 53:529-41.
Pietrasiak, N., Osorio-Santos, K., Shalygin, S., Martin, M. P. & Johansen, J. R. 2019. When is a lineage a species? A case study in Myxacorys gen. nov. (Synechococcales: Cyanobacteria) with the description of two new species from the Americas. J. Phycol. 55:976-96.
Pietrasiak, N., Osorio-Santos, K., Lipson, D. L. & Johansen, J. R. 2021. Trichotorquatus gen. nov. - a new genus of soil cyanobacteria discovered from American drylands. J. Phycol. 57:886-902.
Řeháková, K., Johansen, J. R., Casamatta, D. A., Xuesong, L. & Vincent, J. 2007. Morphological and molecular characterization of selected desert soil cyanobacteria: Three species new to science including Mojavia pulchra gen. et sp. nov. Phycologia 46:481-502.
Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D. L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M. A. & Huelsenbeck, J. P. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61:539-42.
Rudi, K., Skulberg, O. M. & Jakobsen, K. S. 1998. Evolution of cyanobacteria by exchange of genetic material among phyletically related strains. J. Bacteriol. 180:3453-61.
Sant'Anna, C. L. 1997. Cyanophyceae marinhas bentónicas da regiao de Ubatuba, SP. Brasil. Hoehnea. 24:57-74.
Sant'Anna, C. L., Azevedo, M. T. P., Fiore, M. F., Lorenzi, A. S., Kaštovský, J. & Komárek, J. 2011. Subgeneric diversity of the cyanobacterial genus Brasilonema (Cyanobacteria, Scytonemataceae). Revista Brasil. Bot. 34:51-62.
Sant'Anna, C. L., Corderio-Marino, M., Braga, M. D. R. D. A. & Guimaraes, S. M. P. D. B. 1985. Cyanofíceas marinhas benthónicas das Praias de Peruíbe dos Sonhos, município de Itanhaém, SP, Brasil, l. Rickia 12:89-112.
Saraf, A. G., Dawda, H. G. & Singh, P. 2018a. Desikacharya gen. nov., a phylogenetically distinct genus of Cyanobacteria along with the description of two new species, Desikacharya nostocoides sp. nov. and Desikacharya soli sp. nov., and reclassification of Nostoc thermotolerans to Desikacharya thermotolerans comb. nov. Int. J. Syst. Evol. Microbiol. 69:307-15.
Saraf, A., Dawda, H. G., Suradkar, A., Behere, I., Kotulkar, M., Shaikh, Z. M., Kumat, A., Batule, P., Mishra, D. & Singh, P. 2018b. Description of two new species of Aliinostoc and one new species of Desmonostoc from India based on the polyphasic approach and reclassification of Nostoc punensis to Desmonostoc punense comb. nov. FEMS Microbiol. Lett. 365:1-9.
Saraf, A. G., Dawda, H. G. & Singh, P. 2019a. Validation of the genus Desikacharya gen. nov. (Nostocaceae, Cyanobacteria) and three included species. Notulae Algarum 107:1-3.
Saraf, A., Suradkar, A., Dawda, H. G., Gaysina, L. A., Gabidullin, Y., Kumat, A., Behere, I., Kotulkar, M., Batule, P. & Singh, P. 2019b. Phylogenetic complexities of the members of Rivulariaceae with the re-creation of the family Calotrichaceae and description of Dulcicalothrix necridiiformans gen nov., sp. nov., and reclassification of Calothrix desertica. FEMS Microbiol. Lett. 366:1-10.
Sciuto, K., Andreoli, C., Rascio, N., Rocca, N. L. & Moro, I. 2012. Polyphasic approach and typification of selected Phormidium strains (Cyanobacteria). Cladistics 28:357-74.
Sciuto, K., Moschin, E. & Moro, I. 2017. Cryptic cyanobacterial diversity in the Giant Cave (Trieste, Italy): a new genus Timaviella (Leptolyngbyaceae). Cryptogamie Algologie 38:285-323.
Seo, P. S. & Yokota, A. 2003. The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Microbiol. 49:191-203.
Shalygin, S. S., Shalygina, R. R., Redkina, V. V., Gargas, C. B. & Johansen, J. R. 2020. Description of Stenomitos kolaenensis and S. hiloensis sp. nov. (Leptolyngbyaceae, Cyanobacteria) with an emendation of the genus. Phytotaxa 440:108-28.
Shih, P. M., Wu, D., Latifi, A., Axen, S. D., Fewer, D. P., Talla, E., Calteau, A. et al. 2013. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc. Natl. Acad. Sci. USA 110:1053-8.
Soares, F., Tiago, I., Trovão, J., Coelho, C., Mesquita, N., Gil, F., Catarino, L., Cardoso, S. M. & Portugal, A. 2019. Description of Myxacorys almedinensis sp. nov. (Synechococcales, Cyanobacteria) isolated from the limestone walls of the Old Cathedral of Coimbra, Portugal (UNESCO World Heritage Site). Phytotaxa 419:77-90.
Song, G., Jiang, Y. & Li, R. 2015. Scytolyngbya timoleontis, gen. et sp. nov. (Leptolyngbyaceae, Cyanobacteria): a novel false branching cyanobacteria form China. Phytotaxa 224:72-84.
Strunecký, O., Bohunická, M., Johansen, J. R., Čapková, K., Raabová, L., Dvořák, P. & Komárek, J. 2017. A revision of the genus Geitlerinema and a description of the genus Anagnostidinema gen. nov. (Oscillatoriophycidae, Cyanobacteria). Fottea 17:114-26.
Thiers, B. 2021. Index herbariorum. http://sweetgum.nybg.org/science/ih/.
Thompson, J. D., Higgins, D. G. & Gibson, T. J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nuc. Acids Res. 22:4673-80.
Thu, N. K., Tanabe, Y., Yoshida, M., Matsuura, H. & Watanabe, M. M. 2012. Aerosakkonema funiforme gen. et sp. nov. (Oscillatoriales), a new gas-vacuolated oscillatorioid cyanobacterium isolated from a mesotrophic reservoir. Phycologia 51:672-83.
Umezaki, I. 1958. Revision of Brachytrichia Zanadr. and Kyrtuthrix Erceg. Mem. Coll. Agric. Kyoto Univ., Fish. Ser. Spec. 1:55-67.
Umezaki, I. 1961. The marine blue-green algae of Japan. Mem. Coll. Agric. Kyoto Univ. 8:1-149.
Vaccarino, M. A. & Johansen, J. R. 2012. Brasilonema angustatum sp. nov. (Nostocales), a new filamentous cyanobacterium from the Hawaiian Islands. J. Phycol. 48:1178-86.
Varghese, N. J., Mukherjee, S., Ivanova, N., Konstantinidis, K. T., Mavrommatis, K., Kyrpides, N. C. & Pati, A. 2015. Microbial species delineation using whole genome sequences. Nucleic Acids Res. 43:6761-71.
Vaz, M. G. V., Genuário, D. B., Andreote, A. P., Malone, C. F., Sant'Anna, C. L., Barbiero, L. & Fiore, M. F. 2015. Pantanalinema gen. nov. and Alkalinema gen. nov.: novel pseudanabaenacean genera (Cyanobacteria) isolated from saline-alkaline lakes. Int. J. Syst. Evol. Microbiol. 65:298-308.
Vázquez-Martínez, J., Gutierrez-Villagomez, J. M., Fonesca-García, C., Ramírez-Chávez, E., Mondragón-Sánchez, M. L., Partida-Martínez, L., Johansen, J. R. & Molina-Torres, J. 2018. Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico. Phytotaxa 334:167-82.
Villanueva, C. D., Hašler, P., Dvorák, P., Poulícková, A. & Casamatta, D. A. 2018. Brasilonema lichenoides sp. nov. and Chroococcidiopsis lichenoides sp. nov. (Cyanobacteria): two novel cyanobacterial constituents isolated from a tripartite lichen of headstones. J. Phycol. 54:224-33.
Vinogradova, O., Mikhailyuk, T., Glaser, K., Holzinger, A. & Karsten, U. 2017. New species of Ocullatella (Synechococcales, Cyanobacteria) from terrestrial habitats of Ukraine. Ukr. Bot. J. 74:509-20.
Vinogradova, O. & Mikhailyuk, T. 2018. On the taxonomy and nomenclature of some terrestrial taxa of Plectonema s. l. (Cyanophyceae). 1. The case of Plectonema edaphicum. Int. J. Algae 20:211-24.
Wacklin, P., Hoffmann, L. & Komárek, J. 2009. Nomenclatural validation of the genetically revised cyanobacterial genus Dolichospermum (Ralfs ex Bornet et Flahault) comb. nova. Fottea 9:59-64.
Walter, J. M., Coutinho, F. H., Dutilh, B. E., Swings, J., Thompson, F. L. & Thompson, C. C. 2017. Ecogenomics and taxonomy of Cyanobacteria phylum. Front. Microbiol 8:2132.
Waterbury, J. B., Watson, S. W., Valois, F. W. & Franks, D. G. 1986. Biological and ecological characterization of the marine unicellular cyanobacterium Synechococcus. Photosynthetic Picoplankton 214:71-120.
Wilde, S. B., Johansen, J. R., Wilde, H. D., Jiang, P., Bartelme, B. A. & Haynie, R. S. 2014. Aetokthonos hydrillicola gen. et sp. nov.: epiphytic cyanobacteria associated with invasive aquatic plants and implicated in bird deaths from Avian Vacuolar Myelinopathy. Phytotaxa 181:243-60.
Willis, A. & Woodhouse, J. N. 2020. Defining cyanobacterial species: diversity and description through genomics. Crit. Rev. Plant. Sci. 39:101-24.
Wilmotte, A., Van der Auwera, G. & De Wachter, R. 1993. Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (‘Mastigocladus laminosus HTF’) strain PCC75 18, and phylogenetic analysis. FEBS 317:96-100.
Yarza, P., Yilmaz, P., Pruesse, E., Glöckner, F. O., Ludwig, W., Schleifer, K. H., Whitman, W. B., Euzéby, J., Amann, R. & Roselló-Móra, R. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat. Rev. Microbiol. 12:635-45.
Zammit, G., Billi, D. & Albertano, P. 2012. The subaerophytic cyanobacterium Oculatella subterranea (Oscillatoriales, Cyanophyceae) gen. et sp. nov.: a cytomorphological and molecular description. Eur. J. Phycol. 47:341-54.
Zammit, G., Schembri, S. & Fenech, M. 2021. Phototrophic biofilms and microbial mats from the marine littoral of the central Mediterranean. Acta Bot. Croat. 80:112-6.
Zapomělová, E., Jezberová, J., Hrouzek, P., Hisem, D., Reháková, K. & Komárková, J. 2010. Nomenclatural note: polyphasic characterization of three strains of Anabaena reniformis and Aphanizomenon aphanizomenoides (cyanobacteria) and their reclassification to Sphaerospermum gen. nov. (incl. Anabaena kisseleviana). J. Phycol. 45:1363-73.
Zapomělová, E., Skácelová, O., Pumann, P., Kopp, R. & Janecek, E. 2012. Biogeographically interesting planktonic Nostocales (Cyanobacteria) in the Czech Republic and their polyphasic evaluation resulting in taxonomic revisions of Anabaena bergii Ostenfeld 1908 (Chrysosporum gen. nov.) and A. tenericaulis Nygaard 1949 (Dolichospermum tenericaule comb. nova). Hydrobiologia 698:353-65.
Zhou, W. G., Ding, D. W., Yang, Q. S., Ahmad, M., Zhang, Y. Z., Lin, X. C., Zhang, Y. Y., Ling, J. & Dong, J. D. 2018. Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem. Phytotaxa 383:75-92.
Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-15.
Revision and expansion of the genus Spirirestis (Tolypothrichaceae, Cyanobacteria)