OverProt: secondary structure consensus for protein families
Jazyk angličtina Země Velká Británie, Anglie Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
Grantová podpora
Ministry of Education, Youth and Sports
LM2018131
Czech Republic
LM2018140
e-INFRA CZ
PubMed
35674374
DOI
10.1093/bioinformatics/btac384
PII: 6604272
Knihovny.cz E-zdroje
- MeSH
- konsensus MeSH
- počítače MeSH
- proteiny * chemie MeSH
- sekundární struktura proteinů MeSH
- software * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- proteiny * MeSH
SUMMARY: Every protein family has a set of characteristic secondary structures. However, due to individual variations, a single structure is not enough to represent the whole family. OverProt can create a secondary structure consensus, showing the general fold of the family as well as its variation. Our server provides precomputed results for all CATH superfamilies and user-defined computations, visualized by an interactive viewer, which shows the secondary structure element type, length, frequency of occurrence, spatial variability and β-connectivity. AVAILABILITY AND IMPLEMENTATION: OverProt Server is freely available at https://overprot.ncbr.muni.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
CEITEC Central European Institute of Technology Masaryk University 625 00 Brno Czech Republic
Department of Physical Chemistry Faculty of Science Palacký University 771 46 Olomouc Czech Republic
Citace poskytuje Crossref.org
