Towards the phylogenetic placement of the enigmatic African genus Prolabeops Schultz, 1941

. 2022 Nov ; 101 (5) : 1333-1342. [epub] 20220914

Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid36053860

Grantová podpora
Ministry of Scientific Research and Innovation
Swiss National Science Foundation - Switzerland

The small cyprinid genus Prolabeops Schultz, 1941 is restricted to the Nyong and Sanaga River systems in Cameroon. In the past, the genus had been suggested to be either a member of the Labeoninae, Torinae or the Smiliogastrinae mainly on the basis of morphological similarities, and it is nowadays considered as incertae sedis within the Cypriniformes. This study provides the first attempt to reveal the phylogenetic position of Prolabeops using molecular data. For this purpose, the authors sequenced a large fraction of the mitochondrial genome (c. 13,600 bp), including all mitochondrial protein coding genes, of two Prolabeops melanhypopterus specimens and an additional four Enteromius specimens. The large-scale phylogenetic analysis was based on an alignment including all mitochondrial protein coding genes of 902 specimens representing c. 899 cypriniform species. Prolabeops was clearly recovered within the African Smiliogastrinae, forming a weakly supported clade together with Enteromius jae, Enteromius hulstaerti and Barboides gracilis. The study data underline the urgent need of a thorough taxonomic revision of the small African barbs collectively placed in the genus Enteromius.

Zobrazit více v PubMed

Berrebi, P. , Kottelat, M. , Skelton, P. , & Rab, P. (1996). Systematics of

Betancur, R. R. , Wiley, E. O. , Arratia, G. , Acero, A. , Bailly, N. , Miya, M. , … Ortí, G. (2017). Phylogenetic classification of bony fishes. BMC Evolutionary Biology, 17, 40. PubMed PMC

Bleeker, P. (1863). Mémoire sur les poissons de la côte de Guinée. Verhandelingen van de Hollandsche Maatschappij der Wetenschappen te Haarlem(Ser. 2), 18, 1–136.

Bohlen, J. , & Šlechtová, V. (2009). Phylogenetic position of the fish genus

Boulenger, G. A. (1902). Additions à la faune ichthyologique de bassin du Congo. Bruxelles: Spineux & Cie.

Boulenger, G. A. (1903). Descriptions of new freshwater fishes from southern Cameroon. Annals and Magazine of Natural History (Series 7), 12, 435–441.

Boulenger, G. A. (1911). Descriptions of two new African barbels. Annals and Magazine of Natural History, 8, 369–370.

Boulenger, G. A. (1921). Description d'un poisson aveugle découvert par M. G. Geerts dans la grotte de Thysville (Bas‐Congo). Revue de Zoologie Africaine, 9, 252–253.

Brüning, C. (1929).

Chen, W.‐J. , Lheknim, V. , & Mayden, R. L. (2009). Molecular phylogeny of the Cobitoidea (Teleostei: Cypriniformes) revisited: Position of enigmatic loach PubMed

Chernomor, O. , von Haeseler, A. , & Minh, B. Q. (2016). Terrace aware data structure for phylogenomic inference from supermatrices. Systematic Biology, 65, 997–1008. PubMed PMC

Conway, K. W. , Kubicek, K. M. & Britz, R. (2017). Morphological novelty and modest developmental truncation in Barboides, Africa's smallest vertebrates (Teleostei: Cyprinidae). Journal of Morphology, 278, 750–767. PubMed

Cope, E. D. (1867). Synopsis of the Cyprinidæ of Pennsylvania. With supplement on some new species of American and African fishes. Transactions of the American Philosophical Society, 13, 400–407.

Cuvier, G. (1816). Le Règne Animal distribué d'après son organisation pour servir de base à l'histoire naturelle des animaux et d'introduction à l'anatomie comparée. Les reptiles, les poissons, les mollusques et les annélides. Paris: Deterville.

Daget, J. (1984). Contribution a la faune du Cameroun. Poissons des fleuves cotiers. Bulletin du Museum National d'Histoire Naturelle Section A Zoologie Biologie et Ecologie Animales, 6, 177–202.

de Weirdt, D. , Getahun, A. , Tshibwabwa, S. M. , & Teugels, G. G. (2007). The fresh and brackish water fishes of lower Guinea: Families, genera and species. Cyprinidae. In Stiassny M. L. J., Teugels G. G., & Hopkins C. D. (Eds.), The fresh and brackish water fishes of lower Guinea, West‐Central Africa (pp. 466–572). Paris: Publications Scientifiques du Museum Diffusion.

Di Caporiacco, L. (1926). Un nuovo genere di Ciprinide somalo delle acque di pozzo. Monitore Zoologico Italiano, 37, 23–25.

Englmaier, G. K. , Tesfaye, G. , & Bogutskaya, N. G. (2020). A new species of Enteromius (Actinopterygii, Cyprinidae, Smiliogastrinae) from the Awash River, Ethiopia, and the re‐establishment of PubMed PMC

Fowler, H. W. (1935). Scientific results of the Vernay‐Lang Kalahari expedition, March to September, 1930. Freshwater fishes. Annals of the Transvaal Museum, 16, 251–293.

Fowler, H. W. (1936). Zoological results of the George Vanderbilt African expedition of 1934. Part III − The fresh water fishes. Proceedings of the Academy of Natural Sciences of Philadelphia, 88, 243–351.

Fricke, R. , Eschmeyer, W. N. & van der Laan, R. e. (2021). Eschmeyer's catalog of fishes: Genera, species, references. Retrieved from http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp

Froese, R. & Pauly, D. (2021). FishBase, World Wide Web electronic publication . Retrieved from www.fishbase.org

Hamilton, F. (1822). An account of the fishes found in the river Ganges and its branches. Edinburgh: Archibald Constable and Company.

Hayes, M. M. (2020). Molecular investigations of the diversity of freshwater fishes across three continents (PhD dissertation). p. 131. Auburn University, Auburn, AL.

Hayes, M. M. , & Armbruster, J. W. (2017). The taxonomy and relationships of the African small barbs (Cypriniformes: Cyprinidae). Copeia, 105, 348–362.

He, S. , Mayden, R. L. , Wang, X. , Wang, W. , Tang, K. L. , & Chen, Y. (2008). Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein‐coding gene: Further evidence from a nuclear gene of the systematic chaos in the family. Molecular Phylogenetics and Evolution, 46, 818–829. PubMed

Hoang, D. T. , Chernomor, O. , von Haeseler, A. , Minh, B. Q. , & Vinh, L. S. (2018). UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35, 518–522. PubMed PMC

Huelsenbeck, J. P. , & Ronquist, F. (2001). MRBAYES: Bayesian inference ofphylogenetic trees. Bioinformatics, 17, 754–755. PubMed

Kalyaanamoorthy, S. , Minh, B. Q. , Wong, T. K. F. , von Haeseler, A. , & Jermiin, L. S. (2017). ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587–589. PubMed PMC

Kawaguchi, A. , Miya, M. , & Nishida, M. (2001). Complete mitochondrial DNA sequence of Aulopus japonicas (Telostei: Aulopiformes), a basal Eurypterygii: Longer DNA sequences and higher‐level relationships. Ichthyological Research, 48, 213–223.

Kearse, M. , Moir, R. , Wilson, A. , Stones‐Havas, S. , Cheung, M. , Sturrock, S. , … Drummond, A. (2012). Geneious basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647–1649. PubMed PMC

Kisekelwa, T . (2019). The fish diversity of the river systems of the Kahuzi Biega National Park (East DRC) (Doctoral thesis). KU Leuven, Belgium. Retrieved from https://limo.libis.be/primo-explore/fulldisplay?docid=LIRIAS2379238&context=L&vid=Lirias&search_scope=Lirias&tab=default_tab&fromSitemap=1

Kottelat, M. , Britz, R. , Hui, T. H. , & Witte, K.‐E. (2006). PubMed PMC

Lavoue, S. (2020). Origins of Afrotropical freshwater fishes. Zoological Journal of the Linnean Society, 188, 345–411.

Malmstrøm, M. , Britz, R. , Matschiner, M. , Tørresen, O. K. , Hadiaty, R. K. , Yaakob, N. , … Rüber, L. (2018). The most developmentally truncated fishes show extensive PubMed PMC

Mayden, R. L. , & Chen, W.‐J. (2010). The world's smallest vertebrate species of the genus PubMed

Minh, B. Q. , Nguyen, M. A. , & von Haeseler, A. (2013). Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30, 1188–1195. PubMed PMC

Mullens, N. , Sonet, G. , Decru, E. , Virgilio, M. , Snoeks, J. , & Vreven, E. (2020). Mitogenomic characterization and systematic placement of The Congo blind barb Caecobarbus geertsii (Cypriniformes: Cyprinidae). International Journal of Biological Macromolecules, 161, 292–298. PubMed

Nguyen, L. T. , Schmidt, H. A. , von Haeseler, A. , & Minh, B. Q. (2015). IQ‐TREE: A fast and effective stochastic algorithm for estimating maximum‐likelihood phylogenies. Molecular Biology and Evolution, 32, 268–274. PubMed PMC

Nichols, J. T. , & Griscom, L. (1917). Fresh‐water fishes of The Congo basin obtained by the American Museum Congo Expedition, 1909–1915. Bulletin of the American Museum of Natural History, 37, 653–756.

Norman, J. R. (1932). A collection of fishes from Sierra Leone. Annals and Magazine of Natural History, 10, 180–185.

Pellegrin, J. (1928). Characinidés et Cyprinidés du Cameroun recueillis par M. Th. Monod. Description de deux espèces et d'une variété nouvelles. Bulletin de la Société Zoologique de France, 53, 309–316.

Poll, M. (1945). Descriptions de cinq espèces nouvelles de Cyprinidae du Congo belge appartenant aux genres

Poll, M. (1957). Les genres des poissons d'eau douce de l'Afrique. Bruxelles: La Direction de l'Agriculture des Forets et de l'Elevage.

Rab, P. , Machordom, A. , Perdices, A. , & Guegan, J.‐F. (1995). Karyotypes of three

Ren, Q. , & Mayden, R. L. (2016). Molecular phylogeny and biogeography of African diploid barbs, ‘

Ren, Q. , Yang, L. , Chang, C. H. , & Mayden, R. L. (2020). Molecular phylogeny and divergence of major clades in the Puntius complex (Teleostei: Cypriniformes). Zoologica Scripta, 49, 697–709.

Roberts, T. R. (2010).

Ronquist, F. , Teslenko, M. , van der Mark, P. , Ayres, D. L. , Darling, A. , Höhna, S. , … Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542. PubMed PMC

Rüber, L. , Kottelat, M. , Tan, H. H. , Ng, P. K. L. , & Britz, R. (2007). Evolution of miniaturization and the phylogenetic position of PubMed PMC

Rüppell, E. (1835). Neuer Nachtrag von Beschreibungen und Abbildungen neuer Fische, im Nil entdeckt. Museum Senckenbergianum: Abhandlungen aus dem Gebiete der beschreibenden Naturgeschichte, 2, 1–28.

Sanderson, M. J. , & Shaffer, H. B. (2002). Troubleshooting molecular phylogenetic analyses. Annual Review of Ecology and Systematics, 33, 49–72.

Schedel, F. D. B. , Musilova, Z. , & Schliewen, U. K. (2019). East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: New divergence estimates for the east African cichlid radiation. BMC Evolutionary Biology, 19, 25. PubMed PMC

Schmidt, R. C. , & Bart, H. L., Jr. (2015). Nomenclatural changes should not be based on equivocally supported phylogenies: Reply to Yang et al. 2015. Molecular Phylogenetics and Evolution, 90, 193–194. PubMed

Schmidt, R. C. , Bart, H. L., Jr. , & Nyingi, D. W. (2017). Multi‐locus phylogeny reveals instances of mitochondrial introgression and unrecognized diversity in Kenyan barbs (Cyprininae: Smiliogastrini). Molecular Phylogenetics and Evolution, 111, 35–43. PubMed

Schultz, L. P. (1941). New genus and species of cyprinid fish from the Cameroons, Africa. Proceedings of the New England Zoölogical Club, XVIII, 85–90.

Schultz, L. P. (1959). A new cyprinid fish from Siam. Tropical Fish Hobbyist, 7, 36–37.

Skelton, P. (2001). A complete gutide to the freshwater fishes of southern Africa. South Africa: Struik Publishers.

Skelton, P. H. , Swartz, E. R. , & Vreven, E. J. (2018). The identity of

Smith, A. (1841).

Smith, H. M. (1933). Contributions to the ichthyology of Siam. II‐VI. Journal of the Siam Society, Natural History Supplement, 9, 53–87.

Smith, H. M. (1938).

Stiassny, M. L. J. , & Getahun, A. (2007). An overview of labeonin relationships and the phylogenetic placement of the afro‐Asian genus

Stiassny, M. L. J. , & Sakharova, H. (2016). Review of the smiliogastrin cyprinids of the Kwilu River (Kasai Basin, Central Africa), revised diagnosis for PubMed

Stout, C. C. , Tan, M. , Lemmon, A. R. , Lemmon, E. M. , & Armbruster, J. W. (2016). Resolving Cypriniformes relationships using an anchored enrichment approach. BMC Evolutionary Biology, 16, 13. PubMed PMC

Tan, H. H. , & Lim, K. P. (2002). A new species of

Tan, M. , & Armbruster, J. W. (2018). Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei: Ostariophysi). Zootaxa, 4476, 6–39. PubMed

Thys van den Audenaerde, D. F. E. (1965). La redécouverte de

Thys van den Audenaerde, D. F. E. (1974). Quelques observations sur

Tsigenopoulos, C. S. , Rab, P. , Naran, D. , & Berrebi, P. (2002). Multiple origins of polyploidy in the phylogeny of southern African barbs (Cyprinidae) as inferred from mtDNA markers. Heredity, 88, 466–473. PubMed

Yang, L. , Arunachalam, M. , Sado, T. , Levin, B. A. , Golubtsov, A. S. , Freyhof, J. , … He, S. (2012). Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution, 65, 362–379. PubMed

Yang, L. , Hirt, M. V. , Sado, T. , Arunachalam, M. , Manickam, R. , Tang, K. L. , … Miya, M. (2012). Phylogenetic placements of the barbin genera

Yang, L. , Sado, T. , Hirt, M. V. , Pasco‐Viel, E. , Arunachalam, M. , Li, J. , … Mayden, R. L. (2015). Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution, 85, 97–116. PubMed

Najít záznam

Citační ukazatele

Pouze přihlášení uživatelé

Možnosti archivace

Nahrávání dat ...