Paleoproteomic evidence reveals dairying supported prehistoric occupation of the highland Tibetan Plateau

. 2023 Apr 14 ; 9 (15) : eadf0345. [epub] 20230412

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid37043579

The extreme environments of the Tibetan Plateau offer considerable challenges to human survival, demanding novel adaptations. While the role of biological and agricultural adaptations in enabling early human colonization of the plateau has been widely discussed, the contribution of pastoralism is less well understood, especially the dairy pastoralism that has historically been central to Tibetan diets. Here, we analyze ancient proteins from the dental calculus (n = 40) of all human individuals with sufficient calculus preservation from the interior plateau. Our paleoproteomic results demonstrate that dairy pastoralism began on the highland plateau by ~3500 years ago. Patterns of milk protein recovery point to the importance of dairy for individuals who lived in agriculturally poor regions above 3700 m above sea level. Our study suggests that dairy was a critical cultural adaptation that supported expansion of early pastoralists into the region's vast, non-arable highlands, opening the Tibetan Plateau up to widespread, permanent human occupation.

Australian Research Centre for Human Evolution Griffith University Brisbane Australia

Center for Archaeological Science Sichuan University Chengdu China

Center for Tibetan Studies Sichuan University Chengdu China

Climate Change and History Research Initiative Princeton University Princeton NJ USA

Department of Anthropology Harvard University Cambridge USA

Department of Anthropology National Museum of Natural History Smithsonian Institution Washington DC USA

Department of Archaeogenetics Max Planck Institute for Evolutionary Anthropology Leipzig Germany

Department of Archaeology Max Planck Institute for the Science of Human History Jena Germany

Department of Archaeology Max Planck Institute of Geoanthropology Jena Germany

Department of Archaeology University of York York UK

Department of Life Sciences and Systems Biology University of Turin Turin Italy

Domestication and Anthropogenic Evolution Research Group Max Planck Institute of Geoanthropology Jena Germany

Faculty of Arts Masaryk University Brno Czech Republic

Griffith Sciences Griffith University Brisbane Australia

Human Origins Program National Museum of Natural History Smithsonian Institution Washington DC USA

Institute for Evolutionary Medicine University of Zürich Zürich Switzerland

Institute for Prehistoric and Protohistoric Archaeology Kiel University Kiel Germany

isoTROPIC Research Group Max Planck Institute of Geoanthropology Jena Germany

School of Archaeology and Museology Sichuan University Chengdu China

School of Social Science University of Queensland Brisbane Australia

Shaanxi Academy of Archaeology Xian China

Tibetan Cultural Relics Conservation Institute Lhasa China

Zobrazit více v PubMed

J. Qiu, China: The third pole. Nature 454, 393–396 (2008). PubMed

Institute of Medicine, Nutritional Needs in Cold and High-Altitude Environments: Applications for Military Personnel in Field Operations (The National Academy Press, 1996). PubMed

N. Petousi, P. A. Robbins, Human adaptation to the hypoxia of high altitude: The Tibetan paradigm from the pregenomic to the postgenomic era. J. Appl. Physiol. 116, 875–884 (2014). PubMed PMC

X. Yi, Y. Liang, E. Huerta-Sanchez, X. Jin, Z. X. P. Cuo, J. E. Pool, N. Xu, H. Jiang, N. Vinckenbosch, T. S. Korneliussen, H. C. Zheng, T. Liu, W. M. He, K. Li, R. B. Luo, X. F. Nie, H. L. Wu, M. R. Zhao, H. Z. Cao, J. Zou, Y. Shan, S. Z. Li, Q. Yang, P. X. N. Asan, G. Tian, J. M. Xu, X. Liu, T. Jiang, R. H. Wu, G. Y. Zhou, M. F. Tang, J. J. Qin, T. Wang, S. J. Feng, G. H. Li, Huasang, J. Luosang, W. Wang, F. Chen, Y. D. Wang, X. G. Zheng, Z. Li, Z. Bianba, G. Yang, X. P. Wang, S. H. Tang, G. Y. Gao, Y. Chen, Z. Luo, L. Gusang, Z. Cao, Q. H. Zhang, W. H. Ouyang, X. L. Ren, H. Q. Liang, H. S. Zheng, Y. B. Huang, J. X. Li, L. Bolund, K. Kristiansen, Y. R. Li, Y. Zhang, X. Q. Zhang, R. Q. Li, S. G. Li, H. M. Yang, R. Nielsen, J. Wang, J. Wang, Sequencing of 50 human exomes reveals adaptation to high altitude. Science 329, 75–78 (2010). PubMed PMC

J. Yang, Z.-B. Jin, J. Chen, X.-F. Huang, X.-M. Li, Y.-B. Liang, J.-Y. Mao, X. Chen, Z. Zheng, A. Bakshi, D.-D. Zheng, M.-Q. Zheng, N. R. Wray, P. M. Visscher, F. Lu, J. Qu, Genetic signatures of high-altitude adaptation in Tibetans. Proc. Natl. Acad. Sci. U.S.A. 114, 4189–4194 (2017). PubMed PMC

M. Ding, T. Wang, A. M.-S. Ko, H. Chen, H. Wang, G. Dong, H. Lu, W. He, S. Wangdue, H. Yuan, Y. He, L. Cai, Z. Chen, G. Hou, D. Zhang, Z. Zhang, P. Cao, Q. Dai, X. Feng, M. Zhang, H. Wang, M. A. Yang, Q. Fu, Ancient mitogenomes show plateau populations from last 5200 years partially contributed to present-day Tibetans. Proc. Biol. Sci. 287, 20192968 (2020). PubMed PMC

C. Jeong, G. Alkorta-Aranburu, B. Basnyat, M. Neupane, D. B. Witonsky, J. K. Pritchard, C. M. Beall, A. Di Rienzo, Admixture facilitates genetic adaptations to high altitude in Tibet. Nat. Commun. 5, 3281 (2014). PubMed PMC

C.-C. Liu, D. Witonsky, A. Gosling, J. H. Lee, H. Ringbauer, R. Hagan, N. Patel, R. Stahl, J. Novembre, M. Aldenderfer, C. Warinner, A. Di Rienzo, C. Jeong, Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors. Nat. Commun. 13, 1203 (2022). PubMed PMC

F. H. Chen, G. H. Dong, D. J. Zhang, X. Y. Liu, X. Jia, C. B. An, M. M. Ma, Y. W. Xie, L. Barton, X. Y. Ren, Z. J. Zhao, X. H. Wu, M. K. Jones, Agriculture facilitated permanent human occupation of the Tibetan Plateau after 3600 B.P. Science 347, 248–250 (2015). PubMed

D. X. Fu, R. W. Ruan, X. M. Dai, Y. M. Liu, A study on ancient barley, wheat and millet discovered at Changguogou of Tibet. Acta Agron. Sin. 26, 392–398 (2000).

J. d’Alpoim Guedes, H. Lu, Y. Li, R. N. Spengler, X. Wu, M. S. Aldenderfer, Moving agriculture onto the Tibetan plateau: The archaeobotanical evidence. Archaeol. Anthropol. Sci. 6, 255–269 (2014).

Y. Gao, J. S. Yang, Z. K. Ma, Y. Tong, X. Y. Yang, New evidence from the Qugong site in the central Tibetan Plateau for the prehistoric Highland Silk Road. Holocene 31, 230–239 (2021).

L. Tang, H. Lu, J. Song, S. Wangdue, X. Chen, Z. Zhang, X. Liu, N. Boivin, R. N. Spengler III, The transition to a barley-dominant cultivation system in Tibet: First millennium BC archaeobotanical evidence from Bangga. J. Anthropol. Archaeol. 61, 101242 (2021).

K.-H. Knörzer, 3000 years of agriculture in a valley of the High Himalayas. Veg. Hist. Archaeobot. 9, 219–222 (2000).

N. Tashi, Y. H. Liu, and T. Partap, Making Tibet Food Secure: Assessment of Scenarios (International Centre for Integrated Mountain Development, 2002).

G. Miehe, S. Miehe, K. Kaiser, C. Reudenbach, L. Behrendes, L. Duo, F. Schlütz, L. Duo, F. Schlütz, How old is pastoralism in Tibet? An ecological approach to the making of a Tibetan landscape. Palaeogeogr. Palaeoclimatol. Palaeoecol. 276, 130–147 (2009).

D.-D. Wu, C.-P. Yang, M.-S. Wang, K.-Z. Dong, D.-W. Yan, Z.-Q. Hao, S.-Q. Fan, S.-Z. Chu, Q.-S. Shen, L.-P. Jiang, Y. Li, L. Zeng, H.-Q. Liu, H.-B. Xie, Y.-F. Ma, X.-Y. Kong, S.-L. Yang, X.-X. Dong, A. Esmailizadeh, D. M. Irwin, X. Xiao, M. Li, Y. Dong, W. Wang, P. Shi, H.-P. Li, Y.-H. Ma, X. Gou, Y.-B. Chen, Y.-P. Zhang, Convergent genomic signatures of high-altitude adaptation among domestic mammals. Natl. Sci. Rev. 7, 952–963 (2020). PubMed PMC

M. C. Goldstein, C.M. Beall, Nomads of Western Tibet: The Survival of a Way of Life. (Waveland Press, 1990).

R. B. Ekvall, Fields on the Hoof: Nexus of Tibetan Nomadic Pastoralism (Odyssey, 1968).

D. J. Miller, Tough times for Tibetan nomads in western China: Snowstorms, settling down, fences and the demise of traditional nomadic pastoralism. Nomad. People. 4, 83–109 (2000).

R. P. Evershed, S. Payne, A. G. Sherratt, M. S. Copley, J. Coolidge, D. Urem-Kotsu, K. Kotsakis, M. Özdoǧan, A. E. Özdoǧan, O. Nieuwenhuyse, P. M. M. G. Akkermans, D. Bailey, R.-R. Andeescu, S. Campbell, S. Farid, I. Hodder, N. Yalman, M. Özbaşaran, E. Biçakci, Y. Garfinkel, T. Levy, M. M. Burton, Earliest date for milk use in the Near East and southeastern Europe linked to cattle herding. Nature 455, 528–531 (2008). PubMed

O. E. Craig, J. Chapman, C. Heron, L. H. Willis, L. Bartosiewicz, G. Taylor, A. Whittle, M. Collins, Did the first farmers of central and eastern Europe produce dairy foods? Antiquity 79, 882–894 (2005).

M. Bleasdale, K. K. Richter, A. Janzen, S. Brown, A. Scott, J. Zech, S. Wilkin, K. Wang, S. Schiffels, J. Desideri, M. Besse, J. Reinold, M. Saad, H. Babiker, R. C. Power, E. Ndiema, C. Ogola, F. K. Manthi, M. Zahir, M. Petraglia, C. Trachsel, P. Nanni, J. Grossmann, J. Hendy, A. Crowther, P. Roberts, S. T. Goldstein, N. Boivin, Ancient proteins provide evidence of dairy consumption in eastern Africa. Nat. Commun. 12, 632 (2021). PubMed PMC

A. R. Ventresca Miller, S. Wilkin, J. Hendy, T. Turbat, D. Batsukh, N. Bayarkhuu, P.-H. Giscard, J. Bemmann, J. Bayarsaikhan, B. K. Miller, J. Clark, P. Roberts, N. Boivin, The spread of herds and horses into the Altai: How livestock and dairying drove social complexity in Mongolia. PLOS ONE 17, e0265775 (2022). PubMed PMC

C. Jeong, S. Wilkin, T. Amgalantugs, A. S. Bouwman, W. T. T. Taylor, R. W. Hagan, S. Bromage, S. Tsolmon, C. Trachsel, J. Grossmann, J. Littleton, C. A. Makarewicz, J. Krigbaum, M. Burri, A. Scott, G. Davaasambuu, J. Wright, F. Irmer, E. Myagmar, N. Boivin, M. Robbeets, F. J. Rühli, J. Krause, B. Frohlich, J. Hendy, C. Warinner, Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe. Proc. Natl. Acad. Sci. U.S.A. 115, E11248–E11255 (2018). PubMed PMC

S. Wilkin, A. Ventresca Miller, W. T. T. Taylor, B. K. Miller, R. W. Hagan, M. Bleasdale, A. Scott, S. Gankhuyg, A. Ramsøe, S. Uliziibayar, C. Trachsel, P. Nanni, J. Grossmann, L. Orlando, M. Horton, P. W. Stockhammer, E. Myagmar, N. Boivin, C. Warinner, J. Hendy, Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years. Nat. Ecol. Evol. 4, 346–355 (2020). PubMed PMC

F. Zhang, C. Ning, A. Scott, Q. M. Fu, R. Bjørn, W. Y. Li, D. Wei, W. J. Wang, L. Y. Fan, I. Abuduresule, X. J. Hu, Q. R. Ruan, A. Niyazi, G. H. Dong, P. Cao, F. Liu, Q. Y. Dai, X. T. Feng, R. W. Yang, Z. H. Tang, P. C. Ma, C. X. Li, S. Z. Gao, Y. Xu, S. H. Wu, S. Q. Wen, H. Zhu, H. Zhou, M. Robbeets, V. Kumar, J. Krause, C. Warinner, C. Jeong, Y. Q. Cui, The genomic origins of the Bronze Age Tarim Basin mummies. Nature 599, 256–261 (2021). PubMed PMC

M. Xie, A. Shevchenko, B. Wang, A. Shevchenko, C. Wang, Y. Yang, Identification of a dairy product in the grass woven basket from Gumugou Cemetery (3800 BP, northwestern China). Quat. Int. 426, 158–165 (2016).

Y. Yang, A. Shevchenko, A. Knaust, I. Abuduresule, W. Li, X. Hu, C. Wang, A. Shevchenko, Proteomics evidence for kefir dairy in Early Bronze Age China. J. Archaeol. Sci. 45, 178–186 (2014).

S. Payne, Kill-off patterns in sheep and goats: The Mandibles from Aşvan Kale. Anatol. Stud. 23, 281–303 (1973).

Y. S. Zamarayeva, A. V. Kistova, N. N. Pimenova, K. V. Reznikova, N. N. Seredkina, Taymyr reindeer herding as a branch of the economy and a fundamental social identification practice for indigenous peoples of the Siberian Arctic. Mediterr. J. Soc. Sci. 6, 225–232 (2015).

G. Wang, L. Hua, V. R. Squires, G. Du, What road should the grazing industry take on pastoral land in China? AIMS Agric. Food 2, 354–369 (2017).

A. Scott, S. Reinhold, T. Hermes, A. A. Kalmykov, A. Belinskiy, A. Buzhilova, N. Berezina, A. R. Kantorovich, V. E. Maslov, F. Guliyev, B. Lyonnet, P. Gasimov, B. Jalilov, J. Eminli, E. Iskandarov, E. Hammer, S. E. Nugent, R. Hagan, S. V. Sharapova, R. Krause, M. Karapetian, E. Stolarczyk, J. Krause, S. Hansen, W. Haak, C. Warinner, Emergence and intensification of dairying in the Caucasus and Eurasian steppes. Nat. Ecol. Evol. 6, 813–822 (2022). PubMed PMC

C. Warinner, J. Hendy, C. Speller, E. Cappellini, R. Fischer, C. Trachsel, J. Arneborg, N. Lynnerup, O. E. Craig, D. M. Swallow, A. Fotakis, R. J. Christensen, J. V. Olsen, A. Liebert, N. Montalva, S. Fiddyment, S. Charlton, M. Mackie, A. Canci, A. Bouwman, F. Rühli, M. T. P. Gilbert, M. J. Collins, Direct evidence of milk consumption from ancient human dental calculus. Sci. Rep. 4, 7104 (2014). PubMed PMC

J. L. Metcalf, L. K. Ursell, R. Knight, Ancient human oral plaque preserves a wealth of biological data. Nat. Genet. 46, 321–323 (2014). PubMed

J. Hendy, C. Warinner, A. Bouwman, M. J. Collins, S. Fiddyment, R. Fischer, R. Hagan, C. A. Hofman, M. Holst, E. Chaves, L. Klaus, G. Larson, M. Mackie, K. McGrath, A. Z. Mundorff, A. Radini, H. Y. Rao, C. Trachsel, I. M. Velsko, C. F. Speller, Proteomic evidence of dietary sources in ancient dental calculus. Proc. R. Soc. B Biol. Sci. 285, 20180977 (2018). PubMed PMC

S. Charlton, A. Ramsøe, M. Collins, O. E. Craig, R. Fischer, M. Alexander, C. F. Speller, New insights into Neolithic milk consumption through proteomic analysis of dental calculus. Archaeol. Anthropol. Sci. 11, 6183–6196 (2019).

A. Ramsøe, M. Crispin, M. Mackie, K. McGrath, R. Fischer, B. Demarchi, M. J. Collins, J. Hendy, C. Speller, Assessing the degradation of ancient milk proteins through site-specific deamidation patterns. Sci. Rep. 11, 7795 (2021). PubMed PMC

S. Wilkin, A. Ventresca Miller, R. Fernandes, R. Spengler, W. T.-T. Taylor, D. R. Brown, D. Reich, D. J. Kennett, B. J. Culleton, L. Kunz, C. Fortes, A. Kitova, P. Kuznetsov, A. Epimakhov, V. F. Zaibert, A. K. Outram, E. Kitov, A. Khokhlov, D. Anthony, N. Boivin, Dairying enabled early bronze age Yamnaya steppe expansions. Nature 598, 629–633 (2021). PubMed PMC

J. Hendy, A. C. Colonese, I. Franz, R. Fernandes, R. Fischer, D. Orton, A. Lucquin, L. Spindler, J. Anvari, E. Stroud, P. F. Biehl, C. Speller, N. Boivin, M. Mackie, R. R. Jersie-Christensen, J. V. Olsen, M. J. Collins, O. E. Craig, E. Rosenstock, Ancient proteins from ceramic vessels at Çatalhöyük West reveal the hidden cuisine of early farmers. Nat. Commun. 9, 4064 (2018). PubMed PMC

T. Tashi, S. Wangdue, L. Xi, The exaction report of the Gepaseru burial in 2017, Zanda County, Tibet. Res. Tibet. Archaeol. Cult. Reli. 4, 1–27 (2022).

D. B. Madsen, Conceptualizing the Tibetan Plateau: Environmental constraints on the peopling of the “third Pole”. Archaeol. Res. Asia. 5, 24–32 (2016).

J. Dunne, K. Rebay-Salisbury, R. B. Salisbury, A. Frisch, C. Walton-Doyle, R. P. Evershed, Milk of ruminants in ceramic baby bottles from prehistoric child graves. Nature 574, 246–248 (2019). PubMed

C. Warinner, K. K. Richter, M. J. Collins, Paleoproteomics. Chem. Rev. 122, 13401–13446 (2022). PubMed PMC

Q. Qiu, G. J. Zhang, T. Ma, W. B. Qian, Z. Q. Ye, C. C. Cao, Q. J. Hu, J. Kim, D. M. Larkin, L. Auvil, B. Capitanu, J. Ma, H. A. Lewin, X. J. Qian, Y. S. Lang, R. Zhou, L. Z. Wang, K. Wang, J. Q. Xia, S. G. Liao, S. Pan, X. Lu, H. L. Hou, Y. Wang, X. T. Zang, Y. Yin, H. Ma, J. Zhang, Z. F. Wang, Y. M. Zhang, D. W. Zhang, T. Yonezawa, M. Hasegawa, Y. Zhong, W. B. Liu, Y. Zhang, Z. Y. Huang, S. X. Zhang, R. J. Long, H. M. Yang, J. A. Lenstra, D. N. Cooper, Y. Wu, J. Wang, P. Shi, J. Wang, J. Q. Liu, The yak genome and adaptation to life at high altitude. Nat. Genet. 44, 946–949 (2012). PubMed

M. F. Kulyar, W. Y. Yao, Y. M. Ding, K. Li, L. H. Zhang, A. Y. Li, M. Waqas, H. C. Pan, M. Quan, Z. Zeng, K. Mehmood, S. L. Sizhu, J. K. Li, Bioactive potential of yak’s milk and its products; pathophysiological and molecular role as an immune booster in antibiotic resistance. Food Biosci. 39, 1–9 (2021).

L. F. Wang, Y. Ma, H. Li, F. M. Yang, J. J. Cheng, Identification and characterization of yak α-lactalbumin and β-lactoglobulin. J. Dairy Sci. 104, 2520–2528 (2021). PubMed

J. D. Vigne, D. Helmer, Was milk a ‘“secondary product”’ in the Old World Neolithisation process? Its role in the domestication of cattle, sheep and goats. Anthropozoologica 42, 9–40 (2007).

F. H. Chen, F. Welker, C. C. Shen, S. E. Bailey, I. Bergmann, S. Davis, H. Xia, H. Wang, R. Fischer, S. E. Freidline, T. L. Yu, M. M. Skinner, S. Stelzer, G. R. Dong, Q. M. Fu, G. H. Dong, J. Wang, D. J. Zhang, J. J. Hublin, A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau. Nature 569, 409–412 (2019). PubMed

X. J. Zhang, K. E. Witt, M. M. Bañuelos, A. Ko, K. Yuan, S. H. Xu, R. Nielsen, E. Huerta-Sanchez, The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans. Proc. Natl. Acad. Sci. U.S.A. 118, 1–9 (2021). PubMed PMC

D. J. Zhang, H. Xia, F. H. Chen, B. Li, V. Slon, T. Cheng, R. W. Yang, Z. Jacobs, Q. Y. Dai, D. Massilani, X. K. Shen, J. Wang, X. T. Feng, P. Cao, M. A. Yang, J. T. Yao, J. S. Yang, D. B. Madsen, Y. Y. Han, W. J. Ping, F. Liu, C. Perreault, X. S. Chen, M. Meyer, J. Kelso, S. Pääbo, Q. M. Fu, Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau. Science 370, 584–587 (2020). PubMed

T. Cheng, D. J. Zhang, G. M. Smith, O. Jöris, J. Wang, S. L. Yang, H. Xia, X. K. Shen, Q. Li, X. S. Chen, D. P. Lin, Y. Y. Han, Y. S. Liu, M. R. Qiang, B. Li, F. H. Chen, Hominin occupation of the Tibetan Plateau during the Last Interglacial Complex. Quat. Sci. Rev. 265, 107047 (2021).

D. D. Zhang, M. R. Bennett, H. Cheng, L. B. Wang, H. W. Zhang, S. C. Reynolds, S. D. Zhang, X. Q. Wang, T. Li, T. Urban, Q. Pei, Z. F. Wu, P. Zhang, C. R. Liu, Y. F. Wang, C. Wang, D. J. Zhang, R. Lawrence Edwards, Earliest parietal art: Hominin hand and foot traces from the middle Pleistocene of Tibet. Sci. Bull. 66, 2506–2515 (2021). PubMed

X. L. Zhang, B. B. Ha, S. J. Wang, Z. J. Chen, J. Y. Ge, H. Long, W. He, W. Da, X. M. Nian, M. J. Yi, X. Y. Zhou, P. Q. Zhang, Y. S. Jin, O. Bar-Yosef, J. W. Olsen, X. Gao, The earliest human occupation of the high-altitude Tibetan Plateau 40 thousand to 30 thousand years ago. Science 362, 1049–1051 (2018). PubMed

P. J. Brantingham, R. David, D. B. Madsen, Archaeology Augments Tibet’s genetic history. Science 329, –1467 (2010). PubMed

L. L. Ren, G. H. Dong, F. W. Liu, J. d’Alpoim Guedes, R. K. Flad, M. M. Ma, H. M. Li, Y. S. Yang, Y. J. Liu, D. J. Zhang, G. L. Li, J. Y. Li, F. H. Chen, Foraging and farming: Archaeobotanical and zooarchaeological evidence for Neolithic exchange on the Tibetan Plateau. Antiquity 94, 637–652 (2020).

Z. W. Zhang, Z. J. Chen, F. Marshall, H. L. Lu, X. Lemoine, T. Wangyal, T. Dorje, X. Y. Liu, The importance of localized hunting of diverse animals to early inhabitants of the Eastern Tibetan Plateau at the Neolithic site of Xiaoenda. Quat. Int. 529, 38–46 (2019).

J. X. Song, Y. Y. Gao, L. Tang, Z. W. Zhang, M. H. Tang, H. L. Xu, T. Wangyal, H. B. Yuan, L. Li, Y. X. Li, S. Wangdue, X. Y. Liu, H. L. Lu, Farming and multi-resource subsistence in the third and second millennium BC: Archaeobotanical evidence from Karuo. Archaeol. Anthropol. Sci. 13, 1–16 (2021).

F. H. Chen, J. F. Zhang, J. B. Liu, X. Y. Cao, J. Z. Hou, L. P. Zhu, X. K. Xu, X. J. Liu, M. D. Wang, D. Wu, L. X. Huang, T. Zeng, S. Zhang, W. Huang, X. Zhang, K. Yang, Climate change, vegetation history, and landscape responses on the Tibetan Plateau during the Holocene: A comprehensive review. Quat. Sci. Rev. 243, 106444 (2020).

R. B. Harris, Rangeland degradation on the Qinghai-Tibetan plateau: A review of the evidence of its magnitude and causes. J. Arid Environ. 74, 1–12 (2010).

C. S. Hughes, S. Moggridge, T. Müller, P. H. Sorensen, G. B. Morin, J. Krijgsveld, Single-pot, solid-phase-enhanced sample preparation for proteomics experiments. Nat. Protoc. 14, 68–85 (2019). PubMed

E. Dunbar, G. T. Cook, P. Naysmith, B. G. Tripney, S. Xu, AMS 14C dating at the scottish universities environmental research centre (SUERC) radiocarbon dating laboratory. Radiocarbon 58, 9–23 (2016).

C. B. Ramsey, Methods for summarizing radiocarbon datasets. Radiocarbon 59, 1809–1833 (2017).

P. J. Reimer, W. E. N. Austin, E. Bard, A. Bayliss, P. G. Blackwell, C. Bronk Ramsey, M. Butzin, H. Cheng, R. L. Edwards, M. Friedrich, P. M. Grootes, T. P. Guilderson, I. Hajdas, T. J. Heaton, A. G. Hogg, K. A. Hughen, B. Kromer, S. W. Manning, R. Muscheler, J. G. Palmer, C. Pearson, J. Van Der Plicht, R. W. Reimer, D. A. Richards, E. M. Scott, J. R. Southon, C. S. M. Turney, L. Wacker, F. Adolphi, U. Büntgen, M. Capano, S. M. Fahrni, A. Fogtmann-Schulz, R. Friedrich, P. Köhler, S. Kudsk, F. Miyake, J. Olsen, F. Reinig, M. Sakamoto, A. Sookdeo, S. Talamo, The IntCal20 Northern Hemisphere radiocarbon age calibration curve (0-55 cal kBP). Radiocarbon 62, 725–757 (2020).

Y. L. Zhang, B. Y. Li, Z. Du, Datasets of the boundary and area of the Tibetan Plateau. Acta Geogr. Sin. 69, 164–168 (2014).

E. Q. Xu, Land use of the Tibet Plateau in 2015 (version 1.0) (National Tibetan Plateau Data Center, 2019).

J. d’Alpoim Guedes, M. Aldenderfer, The archaeology of the early Tibetan plateau: New research on the initial peopling through the early bronze age. J. Archaeol. Res. 28, 339–392 (2020).

D. Zheng, Q. S. Zhang, S. H. Wu, Mountain Geoecology and Sustainable Development of the Tibetan Plateau (Springer Science & Business Media, 2000).

A. Jarvis, H. I. Reuter, A. Nelson, E. Guevarra, Hole-filled seamless SRTM data V4 (International Centre for Tropical Agriculture, 2008), pp. 1–9; http://srtm.csi.cgiar.org.

E. Z. Tong, A summary of the archaeology of Tibet. Wenwu 9, 9–19 (1985).

M. Aldenderfer, Y. N. Zhang, The prehistory of the tibetan plateau to the seventh century A.D.: Perspectives and Research From China and the West Since 1950. J. World Prehistory 18, 1–55 (2004).

S. Wangdue, Z. Pu, Archaeological research in Tibet during the past 40 years. Zhongguo Zangxue , 201–212 (2005).

H. L. Lu, Trans-Himalaya Interaction: An Archaeological Study of the Prehistoy of Western Tibet (Science Press, 2015).

Y. X. Li, The survey report of Gebusailu Burial Site in Zanda County, Tibet. Kaogu , 39–44 (2001).

Sichuan University, Cultural Heritage Bureau of Tibet Autonomous Region, in The Excavation Report of the Piyang Dongga Site (Sichuan People’s Publishing House, 2008).

H. Wang, Y. X. Li, Y. M. Feng, L. L. Tu, H. L. Zhang, The age of human bones from Redilong, Qamdo County Tibet. Acta Geosci. Tica Sin. 24, 569–572 (2003).

Y. H. He, L. H. Cai, W. Du, X. H. Yu, C. Y. Ma, P. Li, Report on the excavation of the cist burials at the Pukar Gongma Site, ‘Bri stod County, Qinghai Province. Zangxue Xuekan 1, 24–41 (2013).

L. S. Weyrich, S. Duchene, J. Soubrier, L. Arriola, B. Llamas, J. Breen, A. G. Morris, K. W. Alt, D. Caramelli, V. Dresely, M. Farrell, A. G. Farrer, M. Francken, N. Gully, W. Haak, K. Hardy, K. Harvati, P. Held, E. C. Holmes, J. Kaidonis, C. Lalueza-Fox, M. De La Rasilla, A. Rosas, P. Semal, A. Soltysiak, G. Townsend, D. Usai, J. Wahl, D. H. Huson, K. Dobney, A. Cooper, Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature 544, 357–361 (2017). PubMed

A. Gismondi, A. D’Agostino, G. Di Marco, C. Martínez-Labarga, V. Leonini, O. Rickards, A. Canini, Back to the roots: Dental calculus analysis of the first documented case of coeliac disease. Archaeol. Anthropol. Sci. 12, 6 (2020).

K. Hardy, A. Radini, S. Buckley, R. Blasco, L. Copeland, F. Burjachs, J. Girbal, R. Yll, E. Carbonell, J. M. Bermúdez de Castro, Diet and environment 1.2 million years ago revealed through analysis of dental calculus from Europe’s oldest hominin at Sima del Elefante, Spain. Sci. Nat. 104, 2 (2017). PubMed

C. Warinner, J. F. M. Rodrigues, R. Vyas, C. Trachsel, N. Shved, J. Grossmann, A. Radini, Y. Hancock, R. Y. Tito, S. Fiddyment, C. Speller, J. Hendy, S. Charlton, H. U. Luder, D. C. Salazar-García, E. Eppler, R. Seiler, L. H. Hansen, J. A. S. Castruita, S. Barkow-Oesterreicher, K. Y. Teoh, C. D. Kelstrup, J. V. Olsen, P. Nanni, T. Kawai, E. Willerslev, C. Von Mering, C. M. Lewis Jr., M. J. Collins, M. T. P. Gilbert, F. Rühli, E. Cappellini, Pathogens and host immunity in the ancient human oral cavity. Nat. Genet. 46, 336–344 (2014). PubMed PMC

C. Warinner, C. Speller, M. J. Collins, A new era in palaeomicrobiology: Prospects for ancient dental calculus as a long-term record of the human oral microbiome. Philos. Trans. R. Soc. B Biol. Sci. 370, 20130376 (2015). PubMed PMC

C. J. Adler, K. Dobney, L. S. Weyrich, J. Kaidonis, A. W. Walker, W. Haak, C. J. A. Bradshaw, G. Townsend, A. Sołtysiak, K. W. Alt, J. Parkhill, A. Cooper, Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions. Nat. Genet. 45, 450–455 (2013). PubMed PMC

L. Granehäll, K. D. Huang, A. Tett, P. Manghi, A. Paladin, N. O’Sullivan, O. Rota-Stabelli, N. Segata, A. Zink, F. Maixner, Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter. Microbiome 9, 1–18 (2021). PubMed PMC

A. R. Lieverse, Diet and the aetiology of dental calculus. Int. J. Osteoarchaeol. 9, 219–232 (1999).

A. Radini, E. Nikita, S. Buckley, L. Copeland, K. Hardy, Beyond food: The multiple pathways for inclusion of materials into ancient dental calculus. Am. J. Phys. Anthropol. 162, 71–83 (2017). PubMed

A. Scott, R. C. Power, V. Altmann-Wendling, M. Artzy, M. A. S. Martin, S. Eisenmann, R. Hagan, D. C. Salazar-García, Y. Salmon, D. Yegorov, I. Milevski, I. Finkelstein, P. W. Stockhammer, C. Warinner, Exotic foods reveal contact between South Asia and the Near East during the second millennium BCE. Proc. Natl. Acad. Sci. U.S.A. 118, e2014956117 (2021). PubMed PMC

R. C. Power, D. C. Salazar-García, R. M. Wittig, M. Freiberg, A. G. Henry, Dental calculus evidence of Taï Forest Chimpanzee plant consumption and life history transitions. Sci. Rep. 5, 15161 (2015). PubMed PMC

A. Akcalı, N. P. Lang, Dental calculus: The calcified biofilm and its role in disease development. Periodontol. 2000 76, 109–115 (2018). PubMed

I. M. Velsko, K. A. Overmyer, C. Speller, L. Klaus, M. J. Collins, L. Loe, L. A. F. Frantz, K. Sankaranarayanan, C. M. Lewis, J. B. R. Martinez, E. Chaves, J. J. Coon, G. Larson, C. Warinner, The dental calculus metabolome in modern and historic samples. Metabolomics 13, 1–17 (2017). PubMed PMC

M. Mackie, J. Hendy, A. D. Lowe, A. Sperduti, M. Holst, M. J. Collins, C. F. Speller, Preservation of the metaproteome: Variability of protein preservation in ancient dental calculus. Sci. Technol. Archaeol. Res. 3, 58–70 (2017). PubMed PMC

J. Hendy, F. Welker, B. Demarchi, C. Speller, C. Warinner, M. J. Collins, A guide to ancient protein studies. Nat. Ecol. Evol. 2, 791–799 (2018). PubMed

J. Hendy, Ancient protein analysis in archaeology. Sci. Adv. 7, 1–12 (2021). PubMed PMC

Z. W. Zhang, S. Wangdue, H. L. Lu, S. C. Nyima, Identification and Interpretation of Faunal Remains from a Prehistoric Cist Burial in Amdo County North Tibet. J. Tibetol. 12, 1–18 (2015).

T. Tong, L. H. Li, S. Huang, The excavation of Gurugyam cemetery in Gar County, Ngari Prefercture, Tibet Atonomous Region in 2012. Kaogu Xuebao , 563–587 (2014).

J. X. Song, H. L. Lu, Z. Z. Zhang, X. Y. Liu, Archaeobotanical remains from the mid-first millennium AD site of Kaerdong in western Tibet. Archaeol. Anthropol. Sci. 10, 2015–2026 (2018).

M. Aldenderfer, J. T. Eng, Death and Burial Among Two Ancient High Altitude Communities of Nepal (John Wiley and Sons, 2016).

L. L. Ren, G. H. Dong, H. M. Li, D. Rhode, R. K. Flad, G. Q. Li, Y. Yang, Z. X. Wang, L. H. Cai, X. Y. Ren, D. J. Zhang, F. H. Chen, Dating human settlement in the east-central tibetan plateau during the late holocene. Radiocarbon 60, 137–150 (2018).

D. P. Agrawal, J. Kharakwal, S. Kusumgar, M. G. Yadava, Cist burials of the Kumaun Himalayas. Antiquity 69, 550–554 (1995).

H. L. Lu, X. Z. Chen, Z. W. Zhang, L. Tang, X. Lemoine, S. Wangdue, Z. J. Chen, X. Y. Liu, M. D. Frachetti, Early agropastoral settlement and cultural change in central Tibet in the first millennium BC: Excavations at Bangga. Antiquity , 1–18 (2021).

T. Tong, L. H. Li, C. Cilie, J. Yao, Excavations at Chuvtag and Gurugyam cemeteries. Kaogu 7, 29–50 (2015).

D. Chen, Z. Ciren, K. Zhang, The ancient tombs at Jinlinlong in Ganzi County Sichuan. Kaogu 1, 28–36 (1986).

B. X. Zhou, Faunal remains from Qugong Site, in Qugong in Lhasa (Encyclopedia of China Publishing House, 1999).

W. Chen, Analysis of the Kashahu Burial Site. Sichuan wenwu , 36–42 (2011).

G. H. Dong, L. L. Ren, X. Jia, X. Y. Liu, S. M. Dong, H. M. Li, Z. X. Wang, Y. M. Xiao, F. H. Chen, Chronology and subsistence strategy of Nuomuhong Culture in the Tibetan Plateau. Quat. Int. 426, 42–49 (2016).

Z. W. Zhang, Analysis of Animal Bones Unearthed from Ashaonao Site (Bashu Publishing House, 2017).

K. Y. He, J. Chen, X. Z. Chen, Y. G. Fan, J. Li, Analysis of animal bones recovered from Shidaqiu site in Maerkang. Chengdu kaogu faxian , 295–303 (2012).

H. Liu, L. Tang, The laolongtou cemetery and the Yanyuan bronzes. J. Natl. Museum China 6, 22–29 (2006).

L. Li, “Research on the utilization of animal resources at Changning, Qinghai Province.” thesis, Jilin University (2012).

L. L. Ren, “A study on animal exploitation strategies from the late Neolithic to Bronze Age in northeastern Tibetan Plateau and its surrounding areas, China,” thesis, Lanzhou University (2017).

J. Yuan, M. F. Yang, The Siwa Culture Cemetery of Xujianian (Science Press, 2006), pp. 238–244.

K. Brunson, L. L. Ren, Z. Xin, D. Xiaoling, W. Hui, Z. Jing, R. Flad, Zooarchaeology, ancient mtDNA, and radiocarbon dating provide new evidence for the emergence of domestic cattle and caprines in the Tao River Valley of Gansu Province, northwest China. J. Archaeol. Sci. Rep. 31, 102262 (2020).

Y. R. Wang, “Identifying the beginnings of sheep husbandry in western China,” thesis, University of Cambridge (2017).

L. W. Fu, Ganguya in Jiuquan (Cultural Relics Press, 2016).

G. Q. Qi, Archaeology at Donghuishan, Minle–Revelations and Research at the Siba Culture Cemetery (Science Press, 1998).

P. Lu, J. Yuan, Exchange and transformation–A preliminary study of Pre-Qin agricultural production modes in the upper reaches of the Yellow River (part 1). Nanfang Wenwu , 170–179 (2018).

Y. B. Song, G. K. Chen, H. Wang, X. J. Fan, G. Y. Jin, Analysis of animal remains unearthed from Xichengyi, Zhangye in 2014. Dongfang Kaogu, 233–242 (2016).

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