Anaeramoeba pumila sp. nov. and Anaeramoeba sp. OCE22C represent two novel types of symbiosis of Anaeramoebae and prokaryotes
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
Grant support
21-30563S
Czech Science Foundation
60323
Charles University Grant Agency
SVV 260686/2023
Institutional research support grant of the Charles University
PubMed
37929874
DOI
10.1111/jeu.13008
Knihovny.cz E-resources
- Keywords
- SSU rRNA gene, anaerobiosis, marine, morphology, new taxa, phylogeny, ultrastructure,
- MeSH
- Amoeba * genetics MeSH
- Eukaryota MeSH
- Phylogeny MeSH
- Microscopy MeSH
- RNA, Ribosomal, 16S genetics MeSH
- Sequence Analysis, DNA MeSH
- Symbiosis * MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- RNA, Ribosomal, 16S MeSH
Anaeramoebae is a recently described phylum of anaerobic, marine amoebae, and amoeboflagellates belonging to the Metamonada supergroup. So far, six species have been described based on light microscopic morphology and sequences of the SSU rRNA gene. Here we present three new strains of Anaeramoeba with a description of their morphology, ultrastructure, and phylogenetic position based on the analysis of SSU rRNA gene sequences. Two of the strains represent a new species, Anaeramoeba pumila sp. nov., that has the smallest cells of all known Anaeramoeba species, and one that represents a species from the newly recognized Anaeramoeba flamelloides complex. Anaeramoebae are known to have a syntrophic relationship with prokaryotes. Our strains display two novel, remarkable types of symbioses, previously unknown from Anaeramoebae.
See more in PubMed
Hall, T. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
Jerlström-Hultqvist, J., Gallot-Lavallée, L., Salas-Leiva, D.E., Curtis, B.A., Záhonová, K., Čepička, I. et al. (2023) A unique symbiosome in an anaerobic single-celled eukaryote. bioRxiv, 2023-03.
Katoh, K., Misawa, K., Kuma, K.I. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066.
Medlin, L., Elwood, H.J., Stickel, S. & Sogin, M.L. (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 7, 491-499.
Pasulka, A.L., Levin, L.A., Steele, J.A., Case, D.H., Landry, M.R. & Orphan, V.J. (2016) Microbial eukaryotic distributions and diversity patterns in a deep-sea methane seep ecosystem. Environmental Microbiology, 18, 3022-3043.
Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S. et al. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539-542.
Stairs, W.C., Táborský, P., Salomaki, D.E., Kolisko, M., Pánek, T., Eme, L. et al. (2021) Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosome. Current Biology, 31, 5606-5612.e5.
Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312-1313.
Stoeck, T. & Epstein, S. (2003) Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Applied and Environmental Microbiology, 69, 2657-2663.
Táborský, P., Pánek, T. & Čepička, I. (2017) Anaeramoebidae fam. Nov., a novel lineage of anaerobic amoebae and amoeboflagellates of uncertain phylogenetic position. Protist, 168, 807-831.
RefSeq
OQ924550, OQ924553, OQ924551