Construction of Pseudomonas aeruginosa SDK-6 with synthetic lipase gene cassette and optimization of different parameters using response surface methodology for over-expression of recombinant lipase

. 2024 Dec ; 69 (6) : 1279-1290. [epub] 20240503

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid38700831
Odkazy

PubMed 38700831
DOI 10.1007/s12223-024-01167-y
PII: 10.1007/s12223-024-01167-y
Knihovny.cz E-zdroje

Lipases are industrially important enzymes having vast applications in various fields. Cloning and expression of lipase enzyme-encoding genes in suitable host lead to their widespread use in different fields. The present study represents the first attempt towards the expression of the synthetic lipase gene in Pseudomonas aeruginosa. An alkalophilic lipase gene (GenBank accession number: NP_388152) from Bacillus subtilis was synthetically designed and introduced in the pJN105 vector and subsequently cloned in Pseudomonas aeruginosa SDK-6. Agarose gel electrophoresis confirmed the transformation of SDK-6, exhibiting a band difference of ~ 700 bp between native and recombinant pJN105. Further amplification of cloned lipase gene was confirmed using PCR amplification with Lip 1 and Lip 2 primers respectively, followed by restriction analysis. Approximately 15-fold increase in lipase production was observed in recombinant Pseudomonas as compared to the native strain. One factor at a time (OFAT) analysis revealed L-arabinose, inoculum size (0.5%; v/v), and agitation (120 rpm) as significant factors affecting the over-expression of lipase enzyme. Optimization of enzyme induction conditions by central composite design (CCD) led to 1.60-fold increase in the production of lipase at 0.65% (w/v) inducer concentration, OD600-1.075 before induction and 35 °C post induction temperature with overall lipase production of 50.50 IU/mL. Statistical validation of observed value via ANOVA showed an F-value of 138.70 at p < 0.01 with R2 of 0.9921.

Zobrazit více v PubMed

Acikel U, Ersan M, Acikel YS (2010) Optimization of critical medium components using response surface methodology for lipase production by Rhizopus delemar. Food and Bioprod Process 88:31–39. https://doi.org/10.1016/j.fbp.2009.08.003 DOI

Adetunji AI, Olaniran AO (2018) Optimization of culture conditions for enhanced lipase production by an indigenous Bacillus aryabhattai SE3-PB using response surface methodology. Biotechnol Biotechnol Equip 32:1514–1526. https://doi.org/10.1080/13102818.2018.1514985 DOI

Aulakh SS, Prakash R (2010) Optimization of medium and process parameters for the production of lipase from an oil-tolerant Aspergillus sp. (RBD-01). J Basic Microbiol 50:37–42. https://doi.org/10.1002/jobm.200900361 PubMed DOI

Baharum SN, Razak ABS, Basri MC, Rahman MBA, Rahman RNZRA (2003) Organic solvent tolerant lipase by Pseudomonas sp. strain S5: stability of enzyme in organic solvent and physical factors affecting its production. Ann Microbiol 53:75–83

Batumalaie K, Khalili E, Mahat NA, Huyop FZ, Wahab RA (2018) A statistical approach for optimizing the protocol for overexpressing lipase KV1 in Escherichia coli: purification and characterization. Biotechnol Biotechnol Equip 32:69–87. https://doi.org/10.1080/13102818.2017.1407670 DOI

Chen PT, Chen YC, Lin YY, Su HH (2015) Strategy for efficient production of recombinant Staphylococcus epidermidis lipase in Bacillus subtilis. Biochem Eng J 103:152–157. https://doi.org/10.1016/j.bej.2015.07.008 DOI

Dartois V, Baulard A, Schanck K, Colson C (1992) Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. BBA-Gene Struct Expr 1131:253–260. https://doi.org/10.1016/0167-4781(92)90023-S DOI

Elena C, Ravasi P, Castelli ME, Peir S, Menzella HG (2014) Expression of codon optimized genes in microbial systems: current industrial applications and perspectives. Front Microbiol 5:21. https://doi.org/10.3389/fmicb.2014.00021 PubMed DOI PMC

Emtenani S, Asoodeh A, Emtenani S (2013) Molecular cloning of a thermo-alkaliphilic lipase from Bacillus subtilis DR8806: expression and biochemical characterization. Process Biochem 48:1679–1685. https://doi.org/10.1016/j.procbio.2013.08.016 DOI

Francis DM, Page R (2010) Strategies to optimize protein expression in E. coli. Curr Protoc Protein Sci 61:5.24.1–5.24.29.  https://doi.org/10.1002/0471140864.ps0524s61

Gupta R, Gupta N, Rathi P (2004) Bacterial lipases: an overview of production, purification and biochemical properties. Appl Microbiol Biotechnol 64:763–781. https://doi.org/10.1007/s00253-004-1568-8 PubMed DOI

Gupta N, Sahai V, Gupta R (2007) Alkaline lipase from a novel strain Burkholderia multivorans: statistical medium optimization and production in a bioreactor. Proc Biochem 42:518–526. https://doi.org/10.1016/j.procbio.2006.10.006 DOI

Gustafsson C, Govindarajan S, Minshull J (2004) Codon bias and heterologous protein expression. Trends Biotechnol 22:346–353. https://doi.org/10.1016/j.tibtech.2004.04.006 PubMed DOI

Gutarra ML, de Godoy MG, Silva JN, Guedes IA, Lins U, Castilho LR, Freire DM (2009) Lipase production and Penicillium simplicissimum morphology in solid-state and submerged fermentations. Biotechnol J 4:1450–1459. https://doi.org/10.1002/biot.200800298 PubMed DOI

Guzman LM, Belin D, Carson MJ, Beckwith J (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter. J Bacteriol 177:4121–4130. https://doi.org/10.1128/jb.177.14.4121-4130.1995 PubMed DOI PMC

Hasan F, Shah AA, Hameed A (2006) Industrial applications of microbial lipases. Enzyme Microb Tech 39:235–251. https://doi.org/10.1016/j.enzmictec.2005.10.016 DOI

Hirose I, Sano K, Shioda I, Kumano M, Nakamura K, Yamane K (2000) Proteome analysis of Bacillus subtilis extracellular proteins: a two-dimensional protein electrophoretic study. Microbiology 146:65–75. https://doi.org/10.1099/00221287-146-1-65 PubMed DOI

Jaeger KE, Eggert T (2002) Lipases for biotechnology. Curr Opin Biotechnol 13:390–397. https://doi.org/10.1016/S0958-1669(02)00341-5 PubMed DOI

Jaeger KE, Dijkstra BW, Reetz MT (1999) Bacterial biocatalysts: molecular biology, three-dimensional structures and biotechnological applications of lipases. Annu Rev Microbiol 53:315–351. https://doi.org/10.1146/annurev.micro.53.1.315 PubMed DOI

Kai W, Peisheng Y (2016) Optimization of lipase production from a novel strain Thalassospira permensis M35–15 using response surface methodology. Bioengineered 7:298–303. https://doi.org/10.1080/21655979.2016.1197713 PubMed DOI PMC

Kanmani P, Kumaresan K, Aravind J (2015) Gene cloning, expression, and characterization of the Bacillus amyloliquefaciens PS35 lipase. Braz J Microbiol 46:1235–1243. https://doi.org/10.1590/S1517-838246420141068 PubMed DOI PMC

Kaur B, Chakraborty D, Kumar B (2014) Metabolic engineering of Pediococcus acidilactici BD16 for production of vanillin through ferulic acid catabolic pathway and process optimization using response surface methodology. Appl Microbiol Biotechnol 98:8539–8551. https://doi.org/10.1007/s00253-014-5950-x PubMed DOI

Kaur D, Singh RP, Gupta S (2022) Screening and characterization of next-generation biofuels producing bacterial strains. Curr Microbiol 79:85. https://doi.org/10.1007/s00284-022-02781-0 PubMed DOI

Khurana J, Pratibha C, Kaur J (2017) Studies on recombinant lipase production by E. coli effect of media and bacterial expression system optimization. Int J Mol Biol 2:17–23. https://doi.org/10.15406/ijmboa.2017.02.00008 DOI

Kumar S, Kikon K, Upadhyay A, Kanwar SS, Gupta R (2005) Production, purification, and characterization of lipase from thermophilic and alkaliphilic Bacillus coagulans BTS-3. Protein Expr Purif 41:38–44. https://doi.org/10.1016/j.pep.2004.12.010 PubMed DOI

Kumar R, Sharma M, Singh R, Kaur J (2013) Characterization and evolution of a metagenome-derived lipase towards enhanced enzyme activity and thermostability. Mol Cell Biochem 373:149–159. https://doi.org/10.1007/s11010-012-1483-8 PubMed DOI

Larentis AL, Argondizzo AP, Esteves Gdos S, Jessouron E, Galler R, Medeiros MA (2011) Cloning and optimization of induction conditions for mature PsaA (pneumococcal surface adhesin A) expression in Escherichia coli and recombinant protein stability during long-term storage. Protein Expr Purif 78:38–47. https://doi.org/10.1016/j.pep.2011.02.013 PubMed DOI

Lesuisse E, Schanck K, Colson C (1993) Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic tolerant enzyme. Eur J Biochem 216:155–160. https://doi.org/10.1111/j.1432-1033.1993.tb18127.x PubMed DOI

Ma RJ, Wang YH, Liu L, Bai LL, Ban R (2018) Production enhancement of the extracellular lipase LipA in Bacillus subtilis: effects of expression system and Sec pathway components. Protein Expr Purif 142:81–87. https://doi.org/10.1016/j.pep.2017.09.011 PubMed DOI

Ma J, Zhang Z, Wang B, Kong X, Wang Y, Cao S, Feng Y (2006) Over-expression and characterization of a lipase from Bacillus subtilis. Protein Expr Purif 45:22–29. https://doi.org/10.1016/j.pep.2005.06.004 PubMed DOI

Montgomery DC (1997) Response surface methods and other approaches to process optimization. In: Montgomery DC (ed) Design and analysis of experiments. John Wiley and Sons, New York, pp 427–510

Moradi S, Razavi SH, Mousavi SM (2018) Isolation of lipase producing bacteria from olive extract to improve lipase production using a submerge fermentation technique. J Food Bioprocess Eng 1–8.

Muntari B, Amid A, Mel M, Jami MS, Salleh HM (2012) Recombinant bromelain production in Escherichia coli: process optimization in shake flask culture by response surface methodology. AMB Express 2:12. https://doi.org/10.1186/2191-0855-2-12 PubMed DOI PMC

Newman JR, Fuqua C (1999) Broad-host-range expression vectors that carry the L-arabinose-inducible Escherichia coli araBAD promoter and the araC regulator. Gene 227:197–203. https://doi.org/10.1016/s0378-1119(98)00601-5 PubMed DOI

Nguyen VDH, Huynh TNP, Nguyen TTT, Ho HH, Trinh LTP, Nguyen AQ (2024) Expression and characterization of a lipase EstA from Bacillus subtilis KM-BS for application in bio-hydrolysis of waste cooking oil. Protein Expr Purif 215:106419. https://doi.org/10.1016/j.pep.2023.106419 PubMed DOI

Nthangeni MB, Patterton HG, Tonder AV, Vergeer WP, Litthauer D (2001) Over-expression and properties of a purified recombinant Bacillus licheniformis lipase: a comparative report on Bacillus lipases. Enzyme Microb Technol 28:705–712. https://doi.org/10.1016/s0141-0229(01)00316-7 PubMed DOI

Obeng DP, Morrell S, Napier-Munn TJ (2005) Application of central composite rotatable design to modeling the effect of some operating variables on the performance of three-product cyclone. Int J Miner Process 76:181–192. https://doi.org/10.1016/j.minpro.2005.01.002 DOI

Olusesan AT, Azura LK, Forghani B, Bakar FA, Mohamed AK, Radu S, Manap MY, Saari N (2011) Purification, characterization and thermal inactivation kinetics of a non-regioselective thermostable lipase from a genotypically identified extremophilic Bacillus subtilis NS 8. New Biotechnol 28:738–745. https://doi.org/10.1016/j.nbt.2011.01.002 DOI

Packiam KAR, Ramanan RN, Ooi CW, Krishnaswamy L, Tey BT (2020) Stepwise optimization of recombinant protein production in Escherichia coli utilizing computational and experimental approaches. Appl Microbiol Biotechnol 104:3253–3266. https://doi.org/10.1007/s00253-020-10454-w PubMed DOI

Pahoja WM, Sethar MA (2002) A review of enzymatic properties of lipase in plants, animals and microorganisms. J Appl Sci 2:474–484. https://doi.org/10.3923/jas.2002.474.484 DOI

Pandey A, Benjamin S, Soccol CR, Poonam N, Krieger N, Soccols VT (1999) The realm of microbial lipases in biotechnology. Biotechnol Applied Biochem 29:119–131. https://doi.org/10.1111/j.1470-8744.1999.tb00541.x DOI

Papaneophytou CP, Kontopidis GA (2012) Optimization of TNF-α over-expression in Escherichia coli using response surface methodology: purification of the protein and oligomerization studies. Protein Expr Purif 86:35–44. https://doi.org/10.1016/j.pep.2012.09.002 PubMed DOI

Papaneophytou CP, Rinotas V, Douni E, Kontopidis G (2013) A statistical approach for optimization of RANKL over-expression in Escherichia coli: purification and characterization of the protein. Protein Expr Purif 90:9–19. https://doi.org/10.1016/j.pep.2013.04.005 PubMed DOI

Pinsirodom P, Parkin KL (2001) Lipase assays. Curr Protoc Food Anal Chem 1:C3.1.1-C3.1.13. https://doi.org/10.1002/0471142913.fac0301s00

Salihu A, Alam MZ (2015) Solvent tolerant lipases: a review. Process Biochem 50:86–96. https://doi.org/10.1016/j.procbio.2014.10.019 DOI

Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York

Shi B, Wu W, Wen J, Shi Q, Wu S (2010) Cloning and expression of a lipase gene from Bacillus subtilis FS1403 in Escherichia coli. Ann Microbiol 60:399–404. https://doi.org/10.1007/s13213-010-0055-y DOI

Shojaosadati SA, Kolaei SMV, Babaeipour V, Farnoud AM (2008) Recent advances in high cell density cultivation for production of recombinant protein. Iran J Biotechnol 6:63–84

Sinchaikul S, Sookkheo B, Phutrakul S, Pan F, Chen S (2001) Optimization of a thermostable lipase from Bacillus stearothermophilus P1: over-expression, purification, and characterization. Protein Expr Purif 22:388–398. https://doi.org/10.1006/prep.2001 PubMed DOI

Swalley SE, Fulghum JR, Chambers SP (2006) Screening factors effecting a response in soluble protein expression: formalized approach using design of experiments. Anal Biochem 351:122–127. https://doi.org/10.1016/j.ab.2005.11.046 PubMed DOI

Tripathi NK, Shrivastava A (2019) Recent developments in bioprocessing of recombinant proteins: expression hosts and process development. Front Bioeng Biotechnol 7:420. https://doi.org/10.3389/fbioe.2019.00420 PubMed DOI PMC

Wang Y, Wang Z, Xu Q, Du G, Hua Z, Liu J, Li J, Chen J (2009) Lowering induction temperature for enhanced production of polygalacturonate lyase in recombinant Pichia pastoris. Process Biochem 44:949–954. https://doi.org/10.1016/j.procbio.2009.04.019 DOI

Zafar A, Rahman Z, Hamid A, Sughra F, Makhdoom M, Fatima S, Ahmed H, Mehmood Z, Khan M, Aftab MN (2024) Heterologous expression and characterization of a novel thermostable and alkali stable recombinant lipase enzyme from Bacillus thuringensis into E. coli BL21 (DE3) for detergent formulation. J Surfact Deterg. https://doi.org/10.1002/jsde.12731 DOI

Zhou Y, Han LR, He HW, Sang B, Yu DL, Feng JT, Zhang X (2018) Effects of agitation, aeration and temperature on production of a novel glycoprotein GP-1 by Streptomyces kanasenisi ZX01 and scale-up based on volumetric oxygen transfer coefficient. Molecules 23:125. https://doi.org/10.3390/molecules23010125 PubMed DOI PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...