Epigenetic and gene therapy in human and veterinary medicine
Status PubMed-not-MEDLINE Jazyk angličtina Země Velká Británie, Anglie Médium electronic-ecollection
Typ dokumentu časopisecké články, přehledy
PubMed
38751572
PubMed Central
PMC11095531
DOI
10.1093/eep/dvae006
PII: dvae006
Knihovny.cz E-zdroje
- Klíčová slova
- CRISPR-dCas9, DNA methylation, RNA modifications, epigenetics, gene therapy, histone code,
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
Gene therapy is a focus of interest in both human and veterinary medicine, especially in recent years due to the potential applications of CRISPR/Cas9 technology. Another relatively new approach is that of epigenetic therapy, which involves an intervention based on epigenetic marks, including DNA methylation, histone post-translational modifications, and post-transcription modifications of distinct RNAs. The epigenome results from enzymatic reactions, which regulate gene expression without altering DNA sequences. In contrast to conventional CRISP/Cas9 techniques, the recently established methodology of epigenetic editing mediated by the CRISPR/dCas9 system is designed to target specific genes without causing DNA breaks. Both natural epigenetic processes and epigenetic editing regulate gene expression and thereby contribute to maintaining the balance between physiological functions and pathophysiological states. From this perspective, knowledge of specific epigenetic marks has immense potential in both human and veterinary medicine. For instance, the use of epigenetic drugs (chemical compounds with therapeutic potential affecting the epigenome) seems to be promising for the treatment of cancer, metabolic, and infectious diseases. Also, there is evidence that an epigenetic diet (nutrition-like factors affecting epigenome) should be considered as part of a healthy lifestyle and could contribute to the prevention of pathophysiological processes. In summary, epigenetic-based approaches in human and veterinary medicine have increasing significance in targeting aberrant gene expression associated with various diseases. In this case, CRISPR/dCas9, epigenetic targeting, and some epigenetic nutrition factors could contribute to reversing an abnormal epigenetic landscape to a healthy physiological state.
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Barbieri I, Kouzarides T. Role of RNA modifications in cancer. PubMed
Cui L, Ma R, Cai J et al. RNA modifications: importance in immune cell biology and related diseases. PubMed PMC
Goldberg AD, Allis CD, Bernstein E. Epigenetics: a landscape takes shape. PubMed
Allen M. Compelled by the diagram: thinking through C. H. Waddington’s Epigenetic Landscape.
Hardy TM, Tollefsbol TO. Epigenetic diet: impact on the epigenome and cancer. PubMed PMC
Jones PA, Ohtani H, Chakravarthy A et al. Epigenetic therapy in immune-oncology. PubMed
Lan X, Evan C, Cretney J et al. Maternal diet during pregnancy induces gene expression and DNA methylation changes in fetal tissues in sheep. PubMed PMC
McArthur E, Capra JA. Topologically associating domain boundaries that are stable across diverse cell types are evolutionarily constrained and enriched for heritability. PubMed PMC
Rajderkar S, Barozzi I, Zhu Y et al. Topologically associating domain boundaries are required for normal genome function. PubMed PMC
Woodcock CL, Ghosh RP. Chromatin higher-order structure and dynamics. PubMed PMC
Moore L, Le T, Fan G. DNA methylation and its basic function. PubMed PMC
Adam S, Anteneh H, Hornisch M et al. DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation. PubMed PMC
Wu X, Zhang Y. TET-mediated active DNA demethylation: mechanism, function and beyond. PubMed
Rasmussen KD, Helin K. Role of TET enzymes in DNA methylation, development and cancer. PubMed PMC
Bayraktar G, Kreutz MR. The role of activity-dependent DNA demethylation in the adult brain and in neurological disorders. PubMed PMC
Takeshima H, Yoda Y, Wakabayashi M et al. Low-dose DNA demethylating therapy induces reprogramming of diverse cancer-related pathways at the single-cell level. PubMed PMC
Turner B. Reading signals on the nucleosome with a new nomenclature for modified histones. PubMed
Bannister A, Kouzarides T. Regulation of chromatin by histone modifications. PubMed PMC
Williamson EA, Wray JW, Bansal P et al. Overview for the histone codes for DNA repair. PubMed PMC
Shi Y, Whetstine JR. Dynamic regulation of histone lysine methylation by demethylases. PubMed
Wissmann M, Yin N, Müller JM. Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression. PubMed
Vicioso-Mantis M, Aguirre S, Martínez-Balbás MA. JmjC family of histone demethylases form nuclear condensates. PubMed PMC
Couture JF, Collazo E, Ortiz-Tello PA et al. Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase. PubMed
Das A, Chai JC, Jung KH et al. JMJD2A attenuation affects cell cycle and tumourigenic inflammatory gene regulation in lipopolysaccharide stimulated neuroectodermal stem cells. PubMed
Mallette F, Mattiroli F, Cui G et al. RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites. PubMed PMC
Berry WL, Shin S, Lightfoot SA et al. Oncogenic features of the JMJD2A histone demethylase in breast cancer. PubMed
Seto E, Yoshida M. Erasers of histone acetylation: the histone deacetylase enzymes. PubMed PMC
Narita T, Weinert BT, Choudhary C. Functions and mechanisms of non-histone protein acetylation. PubMed
Park SY, Kim JS. A short guide to histone deacetylases including recent progress on class II enzymes. PubMed PMC
Peng L, Seto E. Deacetylation of nonhistone proteins by HDACs and the implications in cancer. PubMed
Večeřa J, Bártová E, Krejčí J et al. HDAC1 and HDAC3 underlie dynamic H3K9 acetylation during embryonic neurogenesis and in schizophrenia-like animals. PubMed PMC
Miranda Furtado CL, Santos Luciano MC D, Silva Santos RD et al. Epidrugs: targeting epigenetic marks in cancer treatment. PubMed PMC
Gladkova MG, Leidmaa E, Anderzhanova EA. Epidrugs in the therapy of central nervous system disorders: a way to drive on? PubMed PMC
Nie J, Liu L, Li X et al. Decitabine, a new star in epigenetic therapy: the clinical application and biological mechanism in solid tumors. PubMed
Wawruszak A, Borkiewicz L, Okon E et al. Vorinostat (SAHA) and breast cancer: an overview. PubMed PMC
Ciechomska I, Przanowski P, Jackl J et al. BIX01294, an inhibitor of histone methyltransferase, induces autophagy-dependent differentiation of glioma stem-like cells. PubMed PMC
Dalpatraj N, Naik A, Thakur N. GSK-J4: an H3K27 histone demethylase inhibitor, as a potential anti-cancer agent. PubMed
Reuter S, Gupta SC, Park B et al. Epigenetic changes induced by curcumin and other natural compounds. PubMed PMC
Peng Y, Ao M, Dong B et al. Anti-inflammatory effects of curcumin in the inflammatory diseases: status, limitations and countermeasures. PubMed PMC
Song T, Lv S, Li N et al. Versatile functions of RNA m6A machinery on chromatin. PubMed PMC
Yelland JN, Bravo JPK, Black JJ et al. A single 2′- PubMed PMC
Zhang C, Jia G. Reversible RNA modification N PubMed PMC
Dominissini D, Rechavi G. 5-methylcytosine mediates nuclear export of mRNA. PubMed PMC
Slotkin W, Nishikura K. Adenosine-to-inosine RNA editing and human disease. PubMed PMC
Wu G, Huang C, Yu YT. Pseudouridine in mRNA: incorporation, detection, and recoding. PubMed PMC
Nance KD, Gamage ST, Alam MM et al. Cytidine acetylation yields a hypoinflammatory synthetic messenger RNA. PubMed PMC
Arango D, Sturgill D, Alhusaini N et al. Acetylation of cytidine in mRNA promotes translation efficiency. PubMed PMC
Dalhat MH, Altayb HN, Khan MI et al. Structural insights of human N-acetyltransferase 10 and identification of its potential novel inhibitors. PubMed PMC
Kirschner J, Cathomen T. Gene therapy for monogenic inherited disorders. PubMed PMC
Elangkovan N, Dickson G, Jaiswal J. Gene therapy for duchenne muscular dystrophy. PubMed PMC
Jogalekar MP, Rajendran RL, Khan F et al. CAR T-cell-based gene therapy for cancers: new perspectives, challenges, and clinical developments. PubMed PMC
Sudhakar V, Richardson RM. Gene therapy for neurodegenerative diseases. PubMed PMC
Choi EH, Suh S, Sears AE et al. Genome editing in the treatment of ocular diseases. PubMed PMC
Pavlin D, Cemazar M, Sersa G et al. PubMed PMC
Argyle DJ. Gene therapy in veterinary medicine. PubMed
Zhang Y, Peng Q, Zhang R et al. Advances in CRISPR/Cas-based strategies on zoonosis.
Doudna JA, Charpentier E. Genome editing. The new frontier of genome engineering with CRISPR-Cas9. PubMed
Ran F, Hsu P, Wright J et al. Genome engineering using the CRISPR-Cas9 system. PubMed PMC
Wang JY, Doudna JA. CRISPR technology: a decade of genome editing is only the beginning. PubMed
Xu W, Jiang X, and Huang L. RNA interference technology. DOI
Song B, Yang S, Hwang GH et al. Analysis of NHEJ-based DNA repair after CRISPR-mediated DNA cleavage. PubMed PMC
Chatterjee N, Walker GC. Mechanisms of DNA damage, repair, and mutagenesis. PubMed PMC
Huang R, Zhou PK. DNA damage repair: historical perspectives, mechanistic pathways and clinical translation for targeted cancer therapy. PubMed PMC
Lemaître C, Grabarz A, Tsouroula K et al. Nuclear position dictates DNA repair pathway choice. PubMed PMC
Kakarougkas A, Jeggo PA. DNA DSB repair pathway choice: an orchestrated handover mechanism. PubMed PMC
Molina A, Bonnet F, Lobjois V et al. G1 phase lengthening during neural tissue development involves CDC25B induced G1 heterogeneity.
Li VC, Ballabeni A, Kirschner MW. Gap 1 phase length and mouse embryonic stem cell self-renewal. PubMed PMC
Ahuja A, Jodkowska K, Teloni F et al. A short G1 phase imposes constitutive replication stress and fork remodelling in mouse embryonic stem cells. PubMed PMC
Yang D, Scavuzzo M, Chmielowiec J et al. Enrichment of G2/M cell cycle phase in human pluripotent stem cells enhances HDR-mediated gene repair with customizable endonucleases. PubMed PMC
Hendel A, Bak RO, Clark JT et al. Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells. PubMed PMC
Anzalone AV, Randolph PB, Davis JR et al. Search-and-replace genome editing without double-strand breaks or donor DNA. PubMed PMC
Saunderson EA, Encabo HH, Devis J et al. CRISPR/dCas9 DNA methylation editing is heritable during human hematopoiesis and shapes immune progeny. PubMed PMC
Lu A, Wang J, Sun W et al. Reprogrammable CRISPR/dCas9-based recruitment of DNMT1 for site-specific DNA demethylation and gene regulation. PubMed PMC
Ashfaq MA, Kumar VD, Reddy PSS et al. Post-transcriptional gene silencing: basic concepts and applications. PubMed
Singh K, Erdman RA, Swanson KM et al. Epigenetic regulation of milk production in dairy cows. PubMed
Xue Q, Huang Y, Cheng C et al. Progress in epigenetic regulation of milk synthesis, with particular emphasis on mRNA regulation and DNA methylation. PubMed PMC
Lesta A, Marín-García PJ, Llobat L. How does nutrition affect the epigenetic changes in dairy cows? PubMed PMC
Melnik BC. Milk: an epigenetic amplifier of FTO-mediated transcription? Implications for Western diseases. PubMed PMC
Melnik BC, Gerd S. Milk exosomes and microRNAs: potential epigenetic regulators. In: Patel V (ed),
Bodo C, Melnik GS. DNA methyltransferase 1-targeting miRNA-148a of dairy milk: a potential bioactive modifier of the human epigenome.
Cai X, Liu Q, Zhang X et al. Identification and analysis of the expression of microRNA from lactating and nonlactating mammary glands of the Chinese swamp buffalo. PubMed
Carrillo-Lozano E, Sebastián-Valles F, Knott-Torcal C. Circulating microRNAs in breast milk and their potential impact on the infant. PubMed PMC
Lee EY, Muller WJ. Oncogenes and tumor suppressor genes. PubMed PMC
Lyu J, Li JJ, Su J et al. DORGE: discovery of oncogenes and tumor suppressor genes using genetic and epigenetic features. PubMed PMC
Kwon MJ, Shin YK. Epigenetic regulation of cancer-associated genes in ovarian cancer. PubMed PMC
Li Y, Seto E. HDACs and HDAC inhibitors in cancer development and therapy. PubMed PMC
Zhang Q, Wang S, Chen J et al. Histone deacetylases (HDACs) guided novel therapies for T-cell lymphomas. PubMed PMC
Vaccaro JA, Naser SA. The role of methyl donors of the methionine cycle in gastrointestinal infection and inflammation. PubMed PMC
Hassan FU, Rehman MS, Khan MS et al. Curcumin as an alternative epigenetic modulator: mechanism of action and potential effects. PubMed PMC
Kok DEG, Dhonukshe-Rutten RAM, Lute C et al. The effects of long-term daily folic acid and vitamin B PubMed PMC
Fernandes GFS, Silva GDB, Pavan AR et al. Epigenetic regulatory mechanisms induced by resveratrol. PubMed PMC
Boyanapalli SSS, Kong AN. “Curcumin, the king of spices”: epigenetic regulatory mechanisms in the prevention of cancer, neurological, and inflammatory diseases. PubMed PMC
Mansouri K, Rasoulpoor S, Daneshkhah A et al. Clinical effects of curcumin in enhancing cancer therapy: a systematic review. PubMed PMC
Shanmugam MK, Rane G, Kanchi MM et al. The multifaceted role of curcumin in cancer prevention and treatment. PubMed PMC
Mishra S, Palanivelu K. The effect of curcumin (turmeric) on Alzheimer’s disease: an overview. PubMed PMC
Boonrueng P, Wasana PWD, Hasriadi,Vajragupta O et al. Combination of curcumin and piperine synergistically improves pain-like behaviors in mouse models of pain with no potential CNS side effects. PubMed PMC
Skinner MK. Environmental epigenetics 2023 update. PubMed PMC
Mirbahai L, Chipman JK. Epigenetic memory of environmental organisms: a reflection of lifetime stressor exposures. PubMed
Probst AV, Mittelsten Scheid O. Stress-induced structural changes in plant chromatin. PubMed
Kovařík A, Koukalová B, Bezděk M et al. Hypermethylation of tobacco heterochromatic loci in response to osmotic stress.
Widiez T, Symeonidi A, Luo C et al. The chromatin landscape of the moss PubMed
Pecinka A, Dinh HQ, Baubec T et al. Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in PubMed PMC
Schenke D, Cai D, Scheel D. Crosstalk between abiotic UV-B and biotic stress depends on H3K9 acetylation. PubMed