Genomic Sequence of a Czech Isolate of Erysimum Latent Virus from Sisymbrium altissimum
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic
Typ dokumentu časopisecké články
Grantová podpora
institutional support MZE-RO0423
Ministry of Agriculture
No 871029
European Virus Archive Global (EVA-GLOBAL) project, which received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement
PubMed
39339529
PubMed Central
PMC11434642
DOI
10.3390/plants13182554
PII: plants13182554
Knihovny.cz E-zdroje
- Klíčová slova
- Erysimum latent virus, HTS, Sisymbrium altissimum, tymovirus,
- Publikační typ
- časopisecké články MeSH
The Erysimum latent virus (ELV), a tymovirus, was first isolated from several wild and cultivated brassicas in Germany. Its virions were shown to be serologically distinct from those of the turnip yellow mosaic virus (TYMV), which is also found in wild and cultivated plants in several European countries but also in other parts of the world. TYMV and ELV were among the first plant viruses to have had their genomes sequenced, and when other tymovirus genomes were sequenced, it was found that, in phylogenies, ELV is probably the basal outlier to all other tymoviruses. Here, we report the near-complete genomic sequence of another isolate of ELV from Czechia. This isolate was found in 1990 in Sisymbrium altissimum plants showing mosaic symptoms. It was detected using ELISA tests and electron microscopy. We have now sequenced the full coding sequence of this isolate using contemporary high throughput methods and found that the German and Czech isolates of ELV are closely related and are of the same virus species.
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Shukla D.D., Schmelzer K. Studies on Viruses and Virus Diseases of Cruciferous Plants IV: The Previously Undescribed Erysimum Latent Virus. Acta Phytopathol. Acad. Sci. Hung. 1972;7:157–167.
Shukla D.D., Proeseler G., Schmelzer K. Studies on Viruses and Virus Diseases of Cruciferous Plants XVIII Beetle Trans-Mission and Some New Natural Hosts of Erysimum Latent Virus. Acta Phytopathol. Acad. Sci. Hung. 1975;10:211–215.
Srifah P., Keese P., Shukla D., Gibbs A. The Primary Structure of the Virion Protein Gene and Encoded Protein of Erysimum Latent Tymovirus. J. Gen. Virol. 1990;71:3085–3088. doi: 10.1099/0022-1317-71-12-3085. PubMed DOI
Srifah P., Keese P., Weiller G., Gibbs A. Comparisons of the Genomic Sequences of Erysimum Latent Virus and Other Tymoviruses: A Search for the Molecular Basis of Their Host Specificities. J. Gen. Virol. 1992;73:1437–1447. doi: 10.1099/0022-1317-73-6-1437. PubMed DOI
Shukla D.D., Gough K.H. Descriptions of Plant Viruses: Erysimum Latent Virus. 1980. [(accessed on 4 June 2024)]. Available online: https://www.dpvweb.net/dpv/showdpv/?dpvno=222.
Špak J., Honetšlegrová J., Petrzik K., Pelikánová J. Identification of Czechoslovak Isolate of Erysimum Latent Virus from Sisymbrium altissimum L. Arch. Phytopath. Pflanz. 1993;28:189–195. doi: 10.1080/03235409309383041. DOI
Ding S., Howe J., Keese P., Mackenzie A., Meek D., Osorlo-Keese M., Skotnicki M., Srifah P., Torronen M., Gibbs A. The Tymobox, a Sequence Shared by Most Tymoviruses: Its Use in Molecular Studies of Tymoviruses. Nucleic Acids Res. 1990;18:1181–1187. doi: 10.1093/nar/18.5.1181. PubMed DOI PMC
Glasa M., Predajňa L., Komínek P., Nagyová A., Candresse T., Olmos A. Molecular Characterization of Divergent Grapevine Pinot Gris Virus Isolates and Their Detection in Slovak and Czech Grapevines. Arch. Virol. 2014;159:2103–2107. doi: 10.1007/s00705-014-2031-5. PubMed DOI
Saldarelli P., Giampetruzzi A., Morelli M., Malossini U., Pirolo C., Bianchedi P., Gualandri V. Genetic Variability of Grapevine Pinot Gris Virus and Its Association with Grapevine Leaf Mottling and Deformation. Phytopathology. 2015;105:555–563. doi: 10.1094/PHYTO-09-14-0241-R. PubMed DOI
Rollin J., Bester R., Brostaux Y., Caglayan K., De Jonghe K., Eichmeier A., Foucart Y., Haegeman A., Koloniuk I., Kominek P., et al. Detection of Single Nucleotide Polymorphisms in Virus Genomes Assembled from High-Throughput Sequencing Data: Large-Scale Performance Testing of Sequence Analysis Strategies. PeerJ. 2023;11:e15816. doi: 10.7717/peerj.15816. PubMed DOI PMC
Bozarth C.S., Weiland J.J., Dreher T.W. Expression of ORF-69 of Turnip Yellow Mosaic Virus Is Necessary for Viral Spread in Plants. Virology. 1992;187:124–130. doi: 10.1016/0042-6822(92)90301-5. PubMed DOI
Tsai C.H., Dreher T.W. Increased Viral Yield and Symptom Severity Result from a Single Amino Acid Substitution in the Turnip Yellow Mosaic Virus Movement Protein. Mol. Plant Microbe Interact. 1993;6:168–173. doi: 10.1094/MPMI-6-268. PubMed DOI
Menzel W., Richert-Pöggeler K., Merkus B., Knierim D., Margaria P., Winter S. Characterization of a New Tymovirus from Erysimum. Acta Hortic. 2024;1392:37–43. doi: 10.17660/ActaHortic.2024.1392.5. DOI
Hall T.A. BioEdit: A User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999;41:95–98.
Tamura K., Stecher G., Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Mol. Biol. Evol. 2021;38:3022–3027. doi: 10.1093/molbev/msab120. PubMed DOI PMC
Martin D.P., Varsani A., Roumagnac P., Botha G., Maslamoney S., Schwab T., Kelz Z., Kumar V., Murrell B. RDP5: A Computer Program for Analyzing Recombination in, and Removing Signals of Recombination from, Nucleotide Sequence Datasets. Virus Evol. 2020;7:veaa087. doi: 10.1093/ve/veaa087. PubMed DOI PMC