Python/NEURON code for simulating biophysically realistic thalamocortical dynamics during sleep
Status PubMed-not-MEDLINE Language English Country Netherlands Media print-electronic
Document type Journal Article
Grant support
R01 MH125557
NIMH NIH HHS - United States
R01 NS109553
NINDS NIH HHS - United States
RF1 NS132913
NINDS NIH HHS - United States
PubMed
39345726
PubMed Central
PMC11434128
DOI
10.1016/j.simpa.2024.100667
PII: 100667
Knihovny.cz E-resources
- Keywords
- Computational neuroscience, NEURON, Neuromodulation, Sleep,
- Publication type
- Journal Article MeSH
Understanding the function of sleep and its associated neural rhythms is an important goal in neuroscience. While many theoretical models of neural dynamics during sleep exist, few include the effects of neuromodulators on sleep oscillations and describe transitions between sleep and wake states or different sleep stages. Here, we started with a C++-based thalamocortical network model that describes characteristic thalamic and cortical oscillations specific to sleep. This model, which includes a biophysically realistic description of intrinsic and synaptic channels, allows for testing the effects of different neuromodulators, intrinsic cell properties, and synaptic connectivity on neural dynamics during sleep. We present a complete reimplementation of this previously-published sleep model in the standardized NEURON/Python framework, making it more accessible to the wider scientific community.
Georgetown University Washington DC USA
Georgia Institute of Technology Atlanta GA USA
Gonzaga University Spokane WA USA
Institute of Computer Science of the Czech Academy of Sciences Prague Czech Republic
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