Diversity of cultivable endophytic fungi in a decumbent subshrub endemic of the Brazilian tropical savanna
Status Publisher Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
SEI 00193.00000229/2021-21
Fundação de Apoio à Pesquisa do Distrito Federal (FAPDF)
001
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
DPG Nº 010/2023.
Universidade de Brasília
PubMed
39560704
DOI
10.1007/s12223-024-01226-4
PII: 10.1007/s12223-024-01226-4
Knihovny.cz E-zdroje
- Klíčová slova
- Colletotrichum, Diaporthe, Peltaea polymorpha, Cerrado, Functional guilds,
- Publikační typ
- časopisecké články MeSH
The diversity of cultivable endophytic fungi in native subshrubs of the Brazilian Cerrado is largely unknown. This study investigated the cultivable endophytic mycobiome of stems, leaves, and flowers of Peltaea polymorpha (Malvaceae). In total, 208 endophytic fungi were isolated, 95 from stems, 65 from leaves, and 48 from flowers. The isolates were classified as ascomycetes belonging to three classes, eight orders, ten families, 12 genera, and 31 species. Diaporthe, Nigrospora, and Colletotrichum were the dominant genera in the three analyzed organs. The richness estimators suggested that the number of species might be slightly higher than observed. The highest values for the Shannon and Simpson diversity indices were observed in stems. Beta diversity showed overlapping of fungal communities in different organs, with a high rate of sharing of taxa. Furthermore, the dominant primary fungal lifestyles were plant pathogens and saprobes. Our findings show that the cultivable endophytic fungal community of P. polymorpha is species-rich and that communities in different organs share genera and species.
Zobrazit více v PubMed
Aly AH, Debbab A, Proksch P (2011) Fungal endophytes: unique plant inhabitants with great promises. Appl Microbiol Biotechnol 90:1829–1845. https://doi.org/10.1007/s00253-011-3270-y PubMed DOI
Arnold AE (2007) Understanding the diversity of foliar fungal endophytes: progress, challenges, and frontiers. Fungal Biol Rev 21:51–66 DOI
Arnold AE, Engelbrecht BMJ (2007) Fungal endophytes nearly double minimum leaf conductance in seedlings of a neotropical tree specie. J Trop Ecol 23:369–372 DOI
Arnold AE, Henk DA, Eells RA, Lutzoni F, Vilgalys R (2007) Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental pcr. Mycol 99:185–206. https://doi.org/10.3852/mycologia.99.2.185 DOI
Arnold AE, Herre EA (2003) Canopy cover and leaf age affect colonization by tropical fungal endophytes: ecological pattern and process in Theobroma cacao (Malvaceae). Mycol 95:388–398 DOI
Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecol 88:541–549 DOI
Arnold AE, Maynard Z, Gilbert GS, Coley PD, Kursar TA (2000) Are tropical fungal endophytes hyperdiverse? Ecol Lett 3:267–274 DOI
Aylward J, Dreyer LL, Steenkamp ET, Wingfield MJ, Roets F (2014) Panmixia defines the genetic diversity of a unique arthropod-dispersed fungus specific to Protea flowers. Ecol Evol 4:3444–3455. https://doi.org/10.1002/ece3.1149 PubMed DOI PMC
Becchimanzi A, Nicoletti R (2022) Aspergillus-bees: a dynamic symbiotic association. Front Microbiol 13:968963. https://doi.org/10.3389/fmicb.2022.968963 PubMed DOI PMC
Bhunjun CS, Phukhamsakda C, Hyde KD et al (2023) Do all fungi have ancestors with endophytic lifestyles? Fungal Divers 125:73–98. https://doi.org/10.1007/s13225-023-00516-5 DOI
Cardoso MRD, Marcuzzo FFN, Barros JR (2014) Climatic classification of Köppen-Geiger for the state of Goiás and the Federal District. ACTA Geog 8:40–55 DOI
Cavararo R (2004) Reserva Ecológica do IBGE: Ambiente e plantas vasculares. Estud Pesqui Inform Geogr 3:1–71
Chai XY, Chai GQ, Xiang YY, Zhang WW, Yin PF (2016) Composition and ecological distribution of endophytic and epiphytic fungi from the foliage of Pteroceltis tatarinowii. Acta Ecol Sin 36:5163–5172
Chi WC, Chen W, He CC, Guo SY, Cha HJ, Tsang LM, Ho TW, Pang KL (2019) A highly diverse fungal community associated with leaves of the mangrove plant Acanthus ilicifolius var. xiamenensis revealed by isolation and metabarcoding analyses. PeerJ 7:e7293. https://doi.org/10.7717/peerj.7293 PubMed DOI PMC
Dixon P (2003) VEGAN, a package of R functions for community ecology. J Veg Sci 14:927–930 http://www.jstor.org/stable/3236992 DOI
Dormann CF, Bernd G, Jochen F (2008) Introducing the bipartite Package: Analysing Ecological Networks. Interaction. 8–11
dos Reis JBA, do Vale HMM, Lorenzi AS (2022a) Insights into taxonomic diversity and bioprospecting potential of Cerrado endophytic fungi: a review exploring an unique Brazilian biome and methodological limitations. World J Microbiol Biotechnol 38:202. https://doi.org/10.1007/s11274-022-03386-2 PubMed DOI
dos Reis JBA, Lorenzi AS, do Vale HMM (2022b) Methods used for the study of endophytic fungi: a review on methodologies and challenges, and associated tips. Arch Microbiol 204:675. https://doi.org/10.1007/s00203-022-03283-0 PubMed DOI PMC
dos Reis JBA, Pappas Junior GJ, Lorenzi AS, Pinho DB, Costa AM, Bustamante MMC, Vale HMM (2023) How deep can the Endophytic Mycobiome go? A case study on six Woody species from the Brazilian Cerrado. J Fungi 9:508. https://doi.org/10.3390/jof9050508 DOI
Dos Santos IR, Abdel-Azeem AM, Mohesien MT, Piekutowska M, Sheir DH, da Silva LL, da Silva CC, Carvalho DDC, Bezerra JDP, Saad HA, Borges LL, Xavier-Santos S (2021) Insights into the bioprospecting of the Endophytic Fungi of the medicinal plant Palicourea rigida Kunth (Rubiaceae): detailed biological activities. J Fungi 7:689. https://doi.org/10.3390/jof7090689 DOI
Du W, Yao Z, Li J, Sun C, Xia J, Wang B, Shi D, Ren L (2020) Diversity and antimicrobial activity of endophytic fungi isolated from Securinega suffruticosa in the Yellow River Delta. PLoS One 15(3):e0229589. https://doi.org/10.1371/journal.pone.0229589 PubMed DOI PMC
Durán M, San Emeterio L, Canals RM (2021) Comparison of culturing and Metabarcoding methods to describe the fungal Endophytic assemblage of Brachypodium rupestre growing in a range of Anthropized disturbance regimes. Biol 10:1246. https://doi.org/10.3390/biology10121246 DOI
Eiten G (1972) The Cerrado vegetation of Brazil. Bot Rev 38:201–341 DOI
Eiten G (1978) Delimitation of the cerrado concept. Vegetatio 36:169–178 DOI
Eiten G (1982) Brazilian “savannas”. In: Huntley BJ, Walker BW (eds) Ecology of tropical savannas. Springer, Berlin Heidelberg, pp 25–47 DOI
El-Shafey NM, Marzouk MA, Yasser MM, Shaban SA, Beemster GTS, AbdElgawad H (2021) Harnessing Endophytic Fungi for enhancing growth, tolerance and quality of rose-scented Geranium (Pelargonium graveolens (L'Hér) Thunb.) plants under cadmium stress: a biochemical study. J Fungi 7:1039. https://doi.org/10.3390/jof7121039 DOI
Fang K, Miao YF, Chen L, Zhou J, Yang ZP, Dong XF, Zhang HB (2019) Tissue-specific and geographical variation in Endophytic Fungi of Ageratina adenophora and fungal associations with the environment. Front Microbiol 10:2919. https://doi.org/10.3389/fmicb.2019.02919 PubMed DOI PMC
Fernandes-Júnior AJ, Konno TUP (2017) Malvaceae do Parque Estadual do Ibitipoca, Estado de Minas Gerais, Brasil. Hoehnea. 44:505–523 DOI
Ferro LO, Bezerra JDP, da Silva TM, de Oliveira CS, dos S Nascimento S et al (2024) Endophytic Diaporthe species from Brazil. Fung Syst Evol 14:251–269
Gamboa MA, Laureano S, Bayman P (2002) Measuring diversity of endophytic fungi in leaf fragments: does size matter? Mycopathologia 156(1):41–45. https://doi.org/10.1023/a:1021362217723 PubMed DOI
Gomes RR, Glienke C, Videira SIR, Lombard L, Groenewald JZ, Crous PW (2013) Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi. Persoonia 31:1–41 PubMed DOI PMC
Gong A, Zhou T, Xiao C, Jiang W, Zhou Y, Zhang J, Liang Q, Yang C, Zheng W, Zhang C (2019) Association between dipsacus saponin VI level and diversity of endophytic fungi in roots of Dipsacus asperoides. World J Microbiol Biotechnol 35:42. https://doi.org/10.1007/s11274-019-2616-y PubMed DOI PMC
Hedtke SM, Blitzer EJ, Montgomery GA, Danforth BN (2015) Introduction of non-native pollinators can Lead to trans-continental movement of bee-associated Fungi. PLoS One 10(6):e0130560. https://doi.org/10.1371/journal.pone.0130560 PubMed DOI PMC
Hilarino MPA, de O e Silveira FA, Oki Y, Rodrigues L, Santos JC, Corrêa Junior A et al (2011) Distribution of the endophytic fungi community in leaves of Bauhinia brevipes (Fabaceae). Acta Bot Bras 25(4):815–821. https://doi.org/10.1590/S0102-33062011000400008 DOI
Hilário S, Gonçalves MFM (2023) Mechanisms underlying the pathogenic and Endophytic lifestyles in Diaporthe: an omics-based approach. Horticulturae 9(4):423. https://doi.org/10.3390/horticulturae9040423 DOI
Hoog GS, Gerrits van den Ende AH (1998) Molecular diagnostics of clinical strains of filamentous Basidiomycetes. Mycoses 41:183–189. https://doi.org/10.1111/j.1439-0507.1998.tb00321.x PubMed DOI
Iantas J, Savi DC, Schibelbein RDS, Noriler SA, Assad BM, Dilarri G, Ferreira H, Rohr J, Thorson JS, Shaaban KA, Glienke C (2021) Endophytes of Brazilian medicinal plants with activity against Phytopathogens. Front Microbiol 12:714750. https://doi.org/10.3389/fmicb.2021.714750 PubMed DOI PMC
Jia M, Chen L, Xin HL, Zheng CJ, Rahman K, Han T, Qin LP (2016) A friendly relationship between Endophytic Fungi and medicinal plants: a systematic review. Front Microbiol 7:906. https://doi.org/10.3389/fmicb.2016.00906 PubMed DOI PMC
Kindt R, Coe R (2005) Tree diversity analysis. A manual and software for common statistical methods for ecological and biodiversity studies. World Agroforestry Centre (ICRAF), Nairobi (Kenya). http://www.worldagroforestry.org/output/tree-diversity-analysis
Klink CA, Machado RB (2005) A conservação do Cerrado brasileiro. Megadiversidade 1:147–155
Küngas K, Bahram M, Põldmaa K (2020) Host tree organ is the primary driver of endophytic fungal community structure in a hemiboreal forest. FEMS Microbiol Ecol 96(2):fiz199. https://doi.org/10.1093/femsec/fiz199 PubMed DOI
Li P, Wu Z, Liu T, Wang Y (2016) Biodiversity, phylogeny, and antifungal functions of Endophytic Fungi associated with Zanthoxylum bungeanum. Int J Mol Sci 17:1541. https://doi.org/10.3390/ijms17091541 PubMed DOI PMC
Liu X, Zhou ZY, Cui JL, Wang ML, Wang JH (2021) Biotransformation ability of endophytic fungi: from species evolution to industrial applications. Appl Microbiol Biotechnol 105:7095–7113. https://doi.org/10.1007/s00253-021-11554-x PubMed DOI PMC
Ma X, Nontachaiyapoom S, Jayawardena RS, Hyde KD, Gentekaki E, Zhou S, Qian Y, Wen T, Kang J (2018) Endophytic Colletotrichum species from Dendrobium spp. in China and northern Thailand. MycoKeys 43:23–57. https://doi.org/10.3897/mycokeys.43.25081 DOI
Martins F, Mina D, Pereira JA, Baptista P (2021) Endophytic fungal community structure in olive orchards with high and low incidence of olive anthracnose. Sci Rep 11:689. https://doi.org/10.1038/s41598-020-79962-z PubMed DOI PMC
Morais EM, Silva AAR, Sousa FWA, Azevedo IMB, Silva HF, Santos AMG, Beserra Júnior JEA, Carvalho CP, Eberlin MN, Porcari AM, Araújo FDDS (2022) Endophytic Trichoderma strains isolated from forest species of the Cerrado-Caatinga ecotone are potential biocontrol agents against crop pathogenic fungi. PLoS One 17:e0265824. https://doi.org/10.1371/journal.pone.0265824 PubMed DOI PMC
Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nat 403:853–858. https://doi.org/10.1038/35002501 DOI
Niu L, Rustamova N, Ning H, Paerhati P, Lu C, Yili A (2022) Diversity and biological activities of Endophytic Fungi from the flowers of the medicinal plant Vernonia anthelmintica. Int J Mol Sci 23:11935. https://doi.org/10.3390/ijms231911935 PubMed DOI PMC
Noriler SA, Savi DC, Aluizio R, Palácio-Cortes AM, Possiede YM, Glienke C (2018) Bioprospecting and structure of fungal endophyte communities found in the Brazilian biomes, Pantanal, and Cerrado. Front Microbiol 9:1526. https://doi.org/10.3389/fmicb.2018.01526 PubMed DOI PMC
Pang B, Yin D, Zhai Y, He A, Qiu L, Liu Q, Ma N, Shen H, Jia Q, Liang Z, Wang D (2022) Diversity of endophytic fungal community in Huperzia serrata from different ecological areas and their correlation with Hup a content. BMC Microbiol 22:191. https://doi.org/10.1186/s12866-022-02605-y PubMed DOI PMC
Pietro-Souza W, Mello IS, Vendruscullo SJ, Silva GFD, Cunha CND, White JF, Soares MA (2017) Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination. PLoS One 12:e0182017. https://doi.org/10.1371/journal.pone.0182017 PubMed DOI PMC
Põlme S, Abarenkov K, Henrik Nilsson R et al (2020) FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Divers 105:1–16. https://doi.org/10.1007/s13225-020-00466-2 DOI
Ren F, Dong W, Yan DH (2019) Organs, cultivars, soil, and fruit properties affect structure of Endophytic Mycobiota of Pinggu peach trees. Microorganisms 7:322. https://doi.org/10.3390/microorganisms7090322 PubMed DOI PMC
Rodriguez RJ, White JF Jr, Arnold AE, Redman RS (2009) Fungal endophytes: diversity and functional roles. New Phytol 182(2):314–330. https://doi.org/10.1111/j.1469-8137.2009.02773.x PubMed DOI
Sun J, Guo L, Zang W, Ping W, Chi D (2008) Diversity and ecological distribution of endophytic fungi associated with medicinal plants. Sci China C Life Sci 51:751–759. https://doi.org/10.1007/s11427-008-0091-z PubMed DOI
Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246 PubMed DOI PMC
Wang R, Zhang Q, Ju M, Yan S, Zhang Q, Gu P (2022) The Endophytic Fungi diversity, community structure, and ecological function prediction of Sophora alopecuroides in Ningxia, China. Microorganisms 10:2099. https://doi.org/10.3390/microorganisms10112099 PubMed DOI PMC
Wang Y, Gao BL, Li XX, Zhang ZB, Yan RM, Yang HL, Zhu D (2015) Phylogenetic diversity of culturable endophytic fungi in Dongxiang wild rice (Oryza rufipogon Griff), detection of polyketide synthase gene and their antagonistic activity analysis. Fungal Biol 119:1032–1045. https://doi.org/10.1016/j.funbio.2015.07.009 PubMed DOI
Wen J, Okyere SK, Wang S, Wang J, Xie L, Ran Y, Hu Y (2022) Endophytic Fungi: an effective alternative source of plant-derived bioactive compounds for pharmacological studies. J Fungi 8:205. https://doi.org/10.3390/jof8020205 DOI
Wickham H (2016) In: Wickham H (ed) ggplot2: elegant graphics for data analysis. Springer-Verlag, New York. https://doi.org/10.1007/978-0-387-98141-3 DOI
Yang G, Li P, Meng L, Xv K, Dong F, Qiu Y, He L, Lin L (2018) Diversity and communities of culturable endophytic fungi from different tree peonies (geoherbs and non-geoherbs), and their biosynthetic potential analysis. Braz J Microbiol 49:47–58. https://doi.org/10.1016/j.bjm.2018.06.006 PubMed DOI PMC
Yao H, Sun X, He C, Maitra P, Li XC, Guo LD (2019) Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem. Microbiome 7:57. https://doi.org/10.1186/s40168-019-0671-0 PubMed DOI PMC
Yao YQ, Lan F, Qiao YM, Wei JG, Huang RS, Li LB (2017) Endophytic fungi harbored in the root of Sophora tonkinensis Gapnep: diversity and biocontrol potential against phytopathogens. Microbiol 6:e00437. https://doi.org/10.1002/mbo3.437 DOI
Yu J, Wu Y, He Z, Li M, Zhu K, Gao B (2018) Diversity and antifungal activity of Endophytic Fungi associated with Camellia oleifera. Mycobiology 46:85–91. https://doi.org/10.1080/12298093.2018.1454008 PubMed DOI PMC