Engineering a Functional Histidine Brace Copper-Binding Site into a De Novo-Designed Protein Scaffold
Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
41169579
PubMed Central
PMC12569686
DOI
10.1021/jacsau.5c00754
Knihovny.cz E-zdroje
- Klíčová slova
- catalysis, de novo protein design, histidine brace copper-binding motif, lytic polysaccharide monooxygenase model, spectroscopic characterization,
- Publikační typ
- časopisecké články MeSH
De novo metalloprotein design has contributed to tremendous advances in bioinorganic chemistry by allowing the manufacturing of proteins with unique structures and functionalities that go beyond evolutionary constraints. Among the array of metal sites that can be engineered within de novo scaffolds, the design of catalytic copper centers is particularly challenging but still harder to achieve due to the versatile coordination environment and redox properties of the copper ion. Here, we present miniLPMO, a fully de novo protein, incorporating a functional histidine brace copper-binding site. Starting from a four-helix-bundle scaffold based on the designed homodimeric α2D protein, our design has integrated rational and computational strategies to optimize coordination shell residues. Circular dichroism and analytical ultracentrifugation experiments indicate that the folding and dimerization state is driven by copper binding. A detailed characterization by UV-Vis and EPR revealed that miniLPMO replicates the spectroscopic features of natural histidine brace sites. Finally, the designed metalloprotein catalyzes the cleavage of glycosidic bonds upon hydrogen peroxide activation, mimicking the activity of natural lytic polysaccharide monooxygenases (LPMOs). This study establishes the feasibility of integrating peculiar catalytic metal-binding sites into scaffolds unrelated to the native protein and designed entirely from scratch.
Department of Chemical Sciences University of Napoli Federico 2 Via Cintia 26 80126 Napoli Italy
Department of Chemistry University of Torino Via Giuria 9 10125 Torino Italy
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