Active maintenance of meiosis-specific chromosome structures in C. elegans by the deubiquitinase DUO-1

. 2025 Sep 12 ; () : . [epub] 20250912

Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic

Typ dokumentu časopisecké články, preprinty

Perzistentní odkaz   https://www.medvik.cz/link/pmid41542524

Grantová podpora
P30 CA124435 NCI NIH HHS - United States
P40 OD010440 NIH HHS - United States
R35 GM126964 NIGMS NIH HHS - United States
T32 GM007790 NIGMS NIH HHS - United States

Meiotic prophase is characterized by a dynamic program in which germ cells undergo a complex series of associations and dissociations of protein complexes that drive assembly, remodeling, and disassembly of meiosis-specific chromosome structures and dramatic changes in chromosome compaction. Failure to properly coordinate these processes can result in improper chromosome segregation, producing aneuploid gametes and inviable zygotes. Here, we investigate the roles of C. elegans DUO-1, an ortholog of mammalian ubiquitin-specific proteases USP26 and USP29, in mediating these dynamic chromosomal events during meiotic prophase. Cytological analyses of duo-1 null mutants indicate that loss of DUO-1 function leads to impaired assembly of synaptonemal complexes (SCs), loss of integrity of meiotic chromosome axes, ineffective homolog pairing, premature separation of sister chromatids, and late-prophase chromosome decompaction. Further, SC instability in duo-1 mutants correlates with depletion of REC-8 cohesin complexes and is accompanied by massive accumulation of early DSB repair intermediates. By using a dual-AID-tagged allele to deplete DUO-1 during meiotic development, we demonstrate that DUO-1 is continually required throughout meiotic prophase progression, to promote proper axis/SC assembly in early prophase, to maintain axis/SC stability during the late pachytene stage, and to promote/maintain chromosome compaction at the end of meiotic prophase. Together, our data reveal that meiotic chromosome structure and meiosis-specific chromosome architecture require active maintenance throughout meiotic prophase, and that this maintenance is necessary for successful meiosis.

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Ur S. N., Corbett K. D., Architecture and dynamics of meiotic chromosomes. Annu Rev Genet 55, 497–526 (2021). PubMed

Moses M. J., The relation between the axial complex of meiotic prophase chromosomes and chromosome pairing in a salamander (Plethodon cinereus). J Biophys Biochem Cytol 4, 633 (1958). PubMed PMC

Ito M., Shinohara A., Chromosome architecture and homologous recombination in meiosis. Front Cell Dev Biol 10, 1097446 (2023).

Jones G., Kleckner N., Zickler D., Meiosis through three centuries. Chromosoma 133, 93–115 (2024). PubMed PMC

Hillers K., Jantsch V., Martinez-Perez E., Yanowitz J., Meiosis. WormBook 1–43 (2017). 10.1895/wormbook.1.178.1. DOI

Castellano-Pozo M., et al. , The kleisin subunit controls the function of C. elegans meiotic cohesins by determining the mode of DNA binding and differential regulation by SCC-2 and WAPL-1. Elife 12, e84138 (2023).

Pasierbek P., et al. , A Caenorhabditis elegans cohesion protein with functions in meiotic chromosome pairing and disjunction. Genes Dev 15, 1349–1360 (2001). PubMed PMC

Severson A. F., Meyer B. J., Divergent kleisin subunits of cohesin specify mechanisms to tether and release meiotic chromosomes. Elife 3, 1–27 (2014).

Woglar A., et al. , Quantitative cytogenetics reveals molecular stoichiometry and longitudinal organization of meiotic chromosome axes and loops. PLoS Biol 18 (2020).

Crawley O., et al. , Cohesin-interacting protein WAPL-1 regulates meiotic chromosome structure and cohesion by antagonizing specific cohesin complexes. Elife 5 (2016).

Goodyer W., et al. , HTP-3 links DSB formation with homolog pairing and crossing over during C. elegans meiosis. Dev Cell 14, 263–274 (2008). PubMed

Kim Y., et al. , The chromosome axis controls meiotic events through a hierarchical assembly of HORMA domain proteins. Dev Cell 31, 487–502 (2014). PubMed PMC

Couteau F., Zetka M., DNA damage during meiosis induces chromatin remodeling and synaptonemal complex disassembly. Dev Cell 20, 353–363 (2011). PubMed

Couteau F., Zetka M., HTP-1 coordinates synaptonemal complex assembly with homolog alignment during meiosis in C. elegans. Genes Dev 19, 2744–2756 (2005). PubMed PMC

Martinez-Perez E., Villeneuve A. M., HTP-1-dependent constraints coordinate homolog pairing and synapsis and promote chiasma formation during C. elegans meiosis. Genes Dev 19, 2727–2743 (2005). PubMed PMC

Martinez-Perez E., et al. , Crossovers trigger a remodeling of meiotic chromosome axis composition that is linked to two-step loss of sister chromatid cohesion. Genes Dev 22, 2886 (2008). PubMed PMC

Stamper E. L., et al. , Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint. PLoS Genet 9, e1003679 (2013).

Rosu S., et al. , The C. elegans DSB-2 protein reveals a regulatory network that controls competence for meiotic DSB formation and promotes crossover assurance. PLoS Genet 9 (2013).

Zhang Z., et al. , Multivalent weak interactions between assembly units drive synaptonemal complex formation. Journal of Cell Biology 219 (2020).

Colaiácovo M. P., et al. , Synaptonemal complex assembly in C. elegans is dispensable for loading strand-exchange proteins but critical for proper completion of recombination. Dev Cell 5, 463–474 (2003). PubMed

Hurlock M. E., et al. , Identification of novel synaptonemal complex components in C. Elegans. Journal of Cell Biology 219 (2020).

MacQueen A. J., Colaiácovo M. P., McDonald K., Villeneuve A. M., Synapsis-dependent and -independent mechanisms stabilize homolog pairing during meiotic prophase in C. elegans. Genes Dev 16, 2428–2442 (2002). PubMed PMC

Smolikov S., et al. , SYP-3 restricts synaptonemal complex assembly to bridge paired chromosome axes during meiosis in Caenorhabditis elegans. Genetics 176, 2015–2025 (2007). PubMed PMC

Smolikov S., Schild-Prüfert K., Colaiácovo M. P., A yeast two-hybrid screen for SYP-3 interactors identifies SYP-4, a component required for synaptonemal complex assembly and chiasma formation in Caenorhabditis elegans meiosis. PLoS Genet 5 (2009).

Blundon J. M., et al. , Skp1 proteins are structural components of the synaptonemal complex in C. elegans. Sci Adv 10, eadl4876 (2024).

Kelly K. O., Dernburg A. F., Stanfield G. M., Villeneuve A. M., Caenorhabditis elegans msh-5 is required for both normal and radiation-induced meiotic crossing over but not for completion of meiosis. Genetics 156, 617–630 (2000). PubMed PMC

Colaiácovo M. P., et al. , A targeted RNAi screen for genes involved in chromosome morphogenesis and nuclear organization in the Caenorhabditis elegans germline. Genetics 162, 113 (2002). PubMed PMC

Wang H., Park H., Liu J., Sternberg P. W., An efficient genome editing strategy to generate putative null mutants in Caenorhabditis elegans using CRISPR/Cas9. G3 8, 3607–3616 (2018). PubMed PMC

Dernburg A. F., et al. , Meiotic recombination in C. elegans initiates by a conserved mechanism and is dispensable for homologous chromosome synapsis. Cell 94, 387–398 (1998). PubMed

Yokoo R., et al. , COSA-1 reveals robust homeostasis and separable licensing and reinforcement steps governing meiotic crossovers. Cell 149, 75–87 (2012). PubMed PMC

Jantsch V., et al. , Targeted gene knockout reveals a role in meiotic recombination for zhp-3, a zip3-related protein in Caenorhabditis elegans. Mol Cell Biol 24, 7998–8006 (2004). PubMed PMC

Zalevsky J., MacQueen A. J., Duffy J. B., Kemphues K. J., Villeneuve A. M., Crossing over during Caenorhabditis elegans meiosis requires a conserved MutS-based pathway that is partially dispensable in budding yeast. Genetics 153, 1271 (1999). PubMed PMC

Colaiácovo M. P., The many facets of SC function during C. elegans meiosis. Chromosoma 115, 195–211 (2006). PubMed

MacQueen A. J., et al. , Chromosome sites play dual roles to establish homologous synapsis during meiosis in C. elegans. Cell 123, 1037–1050 (2005). PubMed PMC

Hayashi M., Chin G. M., Villeneuve A. M., elegans C. germ cells switch between distinct modes of double-strand break repair during meiotic prophase progression. PLoS Genet 3, e191 (2007). PubMed PMC

Pasierbek P., et al. , The Caenorhabditis elegans SCC-3 homologue is required for meiotic synapsis and for proper chromosome disjunction in mitosis and meiosis. Exp Cell Res 289, 245–255 (2003). PubMed

Severson A. F., Ling L., Van Zuylen V., Meyer B. J., The axial element protein HTP-3 promotes cohesin loading and meiotic axis assembly in C. elegans to implement the meiotic program of chromosome segregation. Genes Dev 23, 1763 (2009). PubMed PMC

Zickler D., Kleckner N., Meiotic chromosomes: Integrating structure and function. Annu Rev Genet 33, 603–754 (1999). PubMed

Zetka M. C., Kawasaki I., Strome S., Müller F., Synapsis and chiasma formation in Caenorhabditis elegans require HIM-3, a meiotic chromosome core component that functions in chromosome segregation. Genes Dev 13, 2258–2270 (1999). PubMed PMC

Bhalla N., Wynne D. J., Jantsch V., Dernburg A. F., ZHP-3 acts at crossovers to couple meiotic recombination with synaptonemal complex disassembly and bivalent formation in C. elegans. PLoS Genet 4 (2008).

Phillips C. M., et al. , HIM-8 binds to the X chromosome pairing center and mediates chromosome-specific meiotic synapsis. Cell 123, 1051 (2005). PubMed PMC

Mlynarczyk-Evans S., Villeneuve A. M., Time-course analysis of early meiotic prophase events informs mechanisms of homolog pairing and synapsis in Caenorhabditis elegans. Genetics 207 (2017).

Jaramillo-Lambert A., Ellefson M., Villeneuve A. M., Engebrecht J. A., Differential timing of S phases, X chromosome replication, and meiotic prophase in the C. elegans germ line. Dev Biol 308, 206–221 (2007). PubMed

Severson A. F., Ling L., Van Zuylen V., Meyer B. J., The axial element protein HTP-3 promotes cohesin loading and meiotic axis assembly in C. elegans to implement the meiotic program of chromosome segregation. Genes Dev 23, 1763–1778 (2009). PubMed PMC

Ito M., Shinohara A., Chromosome architecture and homologous recombination in meiosis. Front Cell Dev Biol 10, 1097446 (2023).

Alpi A., Pasierbek P., Gartner A., Loidl J., Genetic and cytological characterization of the recombination protein RAD-51 in Caenorhabditis elegans. Chromosoma 112, 6–16 (2003). PubMed

Woglar A., Villeneuve A. M., Dynamic architecture of DNA repair complexes and the synaptonemal complex at sites of meiotic recombination. Cell 173, 1678–1691 (2018). PubMed PMC

MacQueen A. J., Villeneuve A. M., Nuclear reorganization and homologous chromosome pairing during meiotic prophase require C. elegans chk-2. Genes Dev 15, 1674–1687 (2001). PubMed PMC

Penkner A. M., et al. , Meiotic Chromosome Homology Search Involves Modifications of the Nuclear Envelope Protein Matefin/SUN-1. Cell 139, 920–933 (2009). PubMed

Woglar A., et al. , Matefin/SUN-1 phosphorylation is part of a surveillance mechanism to coordinate chromosome synapsis and recombination with meiotic progression and chromosome movement. PLoS Genet 9 (2013).

Kim Y., Kostow N., Dernburg A. F., The chromosome axis mediates feedback control of chk-2 to ensure crossover formation in C. elegans. Dev Cell 35, 247–261 (2015). PubMed PMC

Zhang L., et al. , Recruitment of Polo-like kinase couples synapsis to meiotic progression via inactivation of CHK-2. Elife 12 (2023).

Penkner A. M., et al. , Meiotic chromosome homology search involves modifications of the nuclear envelope protein Matefin/SUN-1. Cell 139, 920–933 (2009). PubMed

Zhang L., Ward J. D., Cheng Z., Dernburg A. F., The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans. Development 142, 4374–4384 (2015). PubMed PMC

Ashley G. E., et al. , An expanded auxin-inducible degron toolkit for Caenorhabditis elegans. Genetics 217 (2021).

Holzer E., Rumpf-Kienzl C., Falk S., Dammermann A., A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. PLoS Genet 18 (2022).

Janisiw E., et al. , Poly(ADP-ribose) glycohydrolase coordinates meiotic DNA double-strand break induction and repair independent of its catalytic activity. Nat Commun 11, 1–15 (2020). PubMed PMC

Trivedi S., Blazícková J., Silva N., PARG and BRCA1-BARD1 cooperative function regulates DNA repair pathway choice during gametogenesis. Nucleic Acids Res 50, 12291–12308 (2022). PubMed PMC

Yin Y., Smolikove S., Impaired resection of meiotic double-strand breaks channels repair to nonhomologous end joining in Caenorhabditis elegans. Mol Cell Biol 33, 2732 (2013). PubMed PMC

Chan R. C., Severson A. F., Meyer B. J., Condensin restructures chromosomes in preparation for meiotic divisions. Journal of Cell Biology 167, 613–625 (2004). PubMed PMC

Cahoon C. K., Helm J. M., Libuda D. E., Synaptonemal complex central region proteins promote localization of pro-crossover factors to recombination events during caenorhabditis elegans meiosis. Genetics 213, 395–409 (2019). PubMed PMC

Buonomo S. B. C., et al. , Disjunction of homologous chromosomes in meiosis I depends on proteolytic cleavage of the meiotic cohesin Rec8 by separin. Cell 103, 387–398 (2000). PubMed

Uhlmann F., Lottspelch F., Nasmyth K., Sister-chromatid separation at anaphase onset is promoted by cleavage of the cohesin subunit Scc1. Nature 400, 37–42 (1999). PubMed

Watanabe Y., Kitajima T. S., Hyman T., Yanagida M., Hirano T., Shugoshin protects cohesin complexes at centromeres. Philosophical Transactions of the Royal Society B: Biological Sciences 360, 515–521 (2005).

Lee J. Y., Orr-Weaver T. L., The molecular basis of sister-chromatid cohesion. Annu Rev Cell Dev Biol 17, 753–777 (2001). PubMed

Weng K. A., Jeffreys C. A., Bickel S. E., Rejuvenation of meiotic cohesion in oocytes during prophase I is required for chiasma maintenance and accurate chromosome segregation. PLoS Genet 10, e1004607 (2014).

Haseeb M. A., Weng K. A., Bickel S. E., Chromatin-associated cohesin turns over extensively and forms new cohesive linkages in Drosophila oocytes during meiotic prophase. Current Biology 34, 2868–2879.e6 (2024). PubMed PMC

Chan R. C., Severson A. F., Meyer B. J., Condensin restructures chromosomes in preparation for meiotic divisions. Journal of Cell Biology 167, 613–625 (2004). PubMed PMC

Ahuja J. S., et al. , Control of meiotic pairing and recombination by chromosomally tethered 26S proteasome. Science (1979) 355, 408–411 (2017).

Prasada Rao H. B. D., et al. , A SUMO-ubiquitin relay recruits proteasomes to chromosome axes to regulate meiotic recombination. Science (1979) 355, 403–407 (2017).

Zhang R., et al. , A chromosome-coupled ubiquitin-proteasome pathway is required for meiotic surveillance. Cell Death Differ 31, 1730–1745 (2024). PubMed PMC

Fernando L. M., et al. , Proteasomal subunit depletions differentially affect germline integrity in C. elegans. Front Cell Dev Biol 10 (2022).

Jantsch V., et al. , Caenorhabditis elegans prom-1 is required for meiotic prophase progression and homologous chromosome pairing. Mol Biol Cell 18, 4911–4920 (2007). PubMed PMC

Mohammad A., et al. , Initiation of meiotic development is controlled by three post-transcriptional pathways in Caenorhabditis elegans. Genetics 209, 1197 (2018). PubMed PMC

Baudrimont A., et al. , Release of CHK-2 from PPM-1.D anchorage schedules meiotic entry. Sci Adv 8, 8861 (2022).

Brockway H., Balukoff N., Dean M., Alleva B., Smolikove S., The CSN/COP9 signalosome regulates synaptonemal complex assembly during meiotic prophase I of Caenorhabditis elegans. PLoS Genet 10 (2014).

Lake C. M., et al. , The deubiquitinase Usp7 in Drosophila melanogaster is required for synaptonemal complex maintenance. PNAS 121 (2024).

Stiernagle T., Maintenance of C. elegans. WormBook (2006). 10.1895/wormbook.1.101.1. DOI

Paix A., Folkmann A., Rasoloson D., Seydoux G., High efficiency, homology-directed genome editing in Caenorhabditis elegans using CRISPR-Cas9ribonucleoprotein complexes. Genetics 201, 47–54 (2015). PubMed PMC

Jinek M., et al. , A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science (1979) 337, 816–821 (2012).

Pattabiraman D., Roelens B., Woglar A., Villeneuve A. M., Meiotic recombination modulates the structure and dynamics of the synaptonemal complex during C. elegans meiosis. PLoS Genet 13, e1006670 (2017).

Hinman A. W., et al. , Caenorhabditis elegans DSB-3 reveals conservation and divergence among protein complexes promoting meiotic double-strand breaks. PNAS 118 (2021).

Preibisch S., Saalfeld S., Tomancak P., Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics 25, 1463–1465 (2009). PubMed PMC

Ollion J., Cochennec J., Loll F., Escudé C., Boudier T., TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization. Bioinformatics 29, 1840–1841 (2013). PubMed PMC

Tyanova S., et al. , The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat Methods 13, 731–740 (2016). PubMed

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