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Autor
Abrouk, Michael 1 Appels, Rudi 1 Baumann, Ute 1 Bernard, Aurélien 1 Boisvert, Sébastien 1 Cavanagh, Colin 1 Choulet, Frédéric 1 Cui, Dangqun 1 Câmara, Francisco 1 Darrier, Benoît 1 Dimech, Adam 1 Doležel, Jaroslav 1 Eckermann, Paul 1 Fleury, Delphine 1 Forrest, Kerrie 1 Frenkel, Zeev 1 Hayden, Matthew 1 Huang, B Emma 1 Isdale, Don 1 Iwgsc 1
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Pracoviště
Agriculture Victoria Research Departm... 1 Agriculture Victoria Research Departm... 1 Australian Genome Research Facility S... 1 Bioinformatics and Genomics Program C... 1 CSIRO Plant Industry Black Mountain C... 1 GYDLE 1135 Grande Allée Ouest Suite 2... 1 GYDLE 1135 Grande Allée Ouest Suite 2... 1 Global Institute of Food Security Uni... 1 Henan Agricultural University Zhengzh... 1 Henan Institute of Science and Techno... 1 INRA UMR1095 Genetics Diversity and E... 1 Institute of Evolution University of ... 1 Institute of Experimental Botany Cent... 1 International Wheat Genome Sequencing... 1 King Abdullah University of Science a... 1 Level Five Co Ltd GYB Akihabara Kanda... 1 National Research Council of Canada U... 1 Plant Genome and Systems Biology Helm... 1 School of Agriculture Food and Wine U... 1 UC Davis Plant Sciences Plant Genetic... 1
- Formát
- Publikační typ
- Kategorie
- Jazyk
- Země
- Časopis/zdroj
- Dostupnost
- Vlastník
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Autor
Abrouk, Michael 1 Appels, Rudi 1 Baumann, Ute 1 Bernard, Aurélien 1 Boisvert, Sébastien 1 Cavanagh, Colin 1 Choulet, Frédéric 1 Cui, Dangqun 1 Câmara, Francisco 1 Darrier, Benoît 1 Dimech, Adam 1 Doležel, Jaroslav 1 Eckermann, Paul 1 Fleury, Delphine 1 Forrest, Kerrie 1 Frenkel, Zeev 1 Hayden, Matthew 1 Huang, B Emma 1 Isdale, Don 1 Iwgsc 1
-
Pracoviště
Agriculture Victoria Research Departm... 1 Agriculture Victoria Research Departm... 1 Australian Genome Research Facility S... 1 Bioinformatics and Genomics Program C... 1 CSIRO Plant Industry Black Mountain C... 1 GYDLE 1135 Grande Allée Ouest Suite 2... 1 GYDLE 1135 Grande Allée Ouest Suite 2... 1 Global Institute of Food Security Uni... 1 Henan Agricultural University Zhengzh... 1 Henan Institute of Science and Techno... 1 INRA UMR1095 Genetics Diversity and E... 1 Institute of Evolution University of ... 1 Institute of Experimental Botany Cent... 1 International Wheat Genome Sequencing... 1 King Abdullah University of Science a... 1 Level Five Co Ltd GYB Akihabara Kanda... 1 National Research Council of Canada U... 1 Plant Genome and Systems Biology Helm... 1 School of Agriculture Food and Wine U... 1 UC Davis Plant Sciences Plant Genetic... 1
- Formát
- Publikační typ
- Kategorie
- Jazyk
- Země
- Časopis/zdroj
- Dostupnost
- Vlastník
NLK
BioMedCentral
od 2001
Directory of Open Access Journals
od 2000
PubMed Central
od 2001
Europe PubMed Central
od 2001 do 2020
ProQuest Central
od 2015-01-01
Open Access Digital Library
od 2000-01-01
Open Access Digital Library
od 2000-01-01
Medline Complete (EBSCOhost)
od 2011-02-01
Health & Medicine (ProQuest)
od 2015-01-01
ROAD: Directory of Open Access Scholarly Resources
od 2001
Springer Nature OA/Free Journals
od 2000-02-01
PubMed
30115128
DOI
10.1186/s13059-018-1475-4
Knihovny.cz E-zdroje
BACKGROUND: Numerous scaffold-level sequences for wheat are now being released and, in this context, we report on a strategy for improving the overall assembly to a level comparable to that of the human genome. RESULTS: Using chromosome 7A of wheat as a model, sequence-finished megabase-scale sections of this chromosome were established by combining a new independent assembly using a bacterial artificial chromosome (BAC)-based physical map, BAC pool paired-end sequencing, chromosome-arm-specific mate-pair sequencing and Bionano optical mapping with the International Wheat Genome Sequencing Consortium RefSeq v1.0 sequence and its underlying raw data. The combined assembly results in 18 super-scaffolds across the chromosome. The value of finished genome regions is demonstrated for two approximately 2.5 Mb regions associated with yield and the grain quality phenotype of fructan carbohydrate grain levels. In addition, the 50 Mb centromere region analysis incorporates cytological data highlighting the importance of non-sequence data in the assembly of this complex genome region. CONCLUSIONS: Sufficient genome sequence information is shown to now be available for the wheat community to produce sequence-finished releases of each chromosome of the reference genome. The high-level completion identified that an array of seven fructosyl transferase genes underpins grain quality and that yield attributes are affected by five F-box-only-protein-ubiquitin ligase domain and four root-specific lipid transfer domain genes. The completed sequence also includes the centromere.
- MeSH
- centromera metabolismus MeSH
- chromozomy rostlin genetika MeSH
- fruktany analýza MeSH
- fyzikální mapování chromozomů metody MeSH
- genom rostlinný * MeSH
- optické jevy * MeSH
- pšenice genetika MeSH
- semena rostlinná genetika MeSH
- umělé bakteriální chromozomy genetika MeSH
- zemědělství * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, U.S. Gov't, Non-P.H.S. MeSH
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