• MeSH
• chirurgie MeSH
• infekce spojené se zdravotní péčí chirurgie   epidemiologie   etiologie   mikrobiologie   MeSH
• lidé MeSH
• mikrobiologie vody MeSH
• Mycobacterium abscessus * izolace a purifikace   patogenita   MeSH
• sekvenování celého genomu metody   MeSH
• srdce mikrobiologie   MeSH
• Check Tag
• lidé MeSH
• Publikační typ
• přehledy MeSH

Introduction. Cystic fibrosis (CF) is a serious disease with multisystemic clinical signs that is easily and frequently complicated by bacterial infection. Recently, the prevalence of nontuberculous mycobacteria as secondary contaminants of CF has increased, with the Mycobacterium avium complex (MAC) and Mycobacterium abscessus complex (MABSC) being the most frequently identified. The MABSC includes subspecies of significant clinical importance, mainly due to their resistance to antibiotics.Gap statement. Sensitive method for early detection and differentiation of MABSC members and MAC complex for use in routine clinical laboratories is lacking. A method based on direct DNA isolation from sputum, using standard equipment in clinical laboratories and allowing uncovering of possible sample inhibition (false negative results) would be required. The availability of such a method would allow accurate and accelerated time detection of MABSC members and their timely and targeted treatment.Aim. To develop a real time multiplex assay for rapid and sensitive identification and discrimination of MABSC members and MAC complex.Methodology. The method of DNA isolation directly from the sputum of patients followed by quadruplex real-time quantitative PCR (qPCR) detection was developed and optimised. The sensitivity and limit of detection (LOD) of the qPCR was determined using human sputum samples artificially spiked with a known amount of M. abscessus subsp. massiliense (MAM).Results. The method can distinguish between MAC and MABSC members and, at the same time, to differentiate between M. abscessus subsp. abscessus/subsp. bolletii (MAAb/MAB) and MAM. The system was verified using 61 culture isolates and sputum samples from CF and non-CF patients showing 29.5 % MAAb/MAB, 14.7 % MAM and 26.2 % MAC. The LOD was determined to be 1 490 MAM cells in the sputum sample with the efficiency of DNA isolation being 95.4 %. Verification of the qPCR results with sequencing showed 100 % homology.Conclusions. The developed quadruplex qPCR assay, which is preceded by DNA extraction directly from patients' sputum without the need for culturing, significantly improves and speeds up the entire process of diagnosing CF patients and is therefore particularly suitable for use in routine laboratories.

• MeSH
• atypické mykobakteriální infekce * diagnóza   farmakoterapie   MeSH
• cystická fibróza * komplikace   mikrobiologie   MeSH
• DNA terapeutické užití   MeSH
• intracelulární infekce bakterií Mycobacterium avium * epidemiologie   MeSH
• kvantitativní polymerázová řetězová reakce MeSH
• lidé MeSH
• Mycobacterium abscessus * genetika   MeSH
• Mycobacterium avium komplex genetika   MeSH
• netuberkulózní mykobakterie MeSH
• sputum mikrobiologie   MeSH
• Check Tag
• lidé MeSH
• Publikační typ
• časopisecké články MeSH