Phylogenetic and morphological analyses on Rigidoporus were carried out. The genus Rigidoporus (Hymenochaetales, Basidiomycota), typified by R. microporus (Fr.) Overeem. (synonym Polyporus micromegas Mont.), was established by Murrill in 1905. The genus is mainly characterized by annual to perennial, resupinate, effused-reflexed to pileate or stipitate basidiomata with azonate or concentrically zonate and sulcate upper surface, a monomitic to pseudo-dimitic hyphal structure, simple-septate generative hyphae, and ellipsoid to globose basidiospores. Phylogeny on species of the genus is reconstructed with two loci DNA sequences including the internal transcribed spacer regions and the large subunit. Three new species in Rigidoporus are described and illustrated from Asia, and one new combination in the genus is proposed. The main morphological characteristics of the currently accepted species of Rigidoporus are provided.
- MeSH
- Basidiomycota * genetika MeSH
- DNA fungální genetika MeSH
- fylogeneze MeSH
- mezerníky ribozomální DNA genetika chemie MeSH
- ribozomální DNA genetika chemie MeSH
- sekvenční analýza DNA MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Asie MeSH
Morphological and molecular evaluation of tapeworms of the genus Bothriocephalus Rudolphi, 1808 (Cestoda: Bothriocephalidea), based on newly collected and uniformly fixed worms from freshwater fishes in Canada and the United States has revealed unexpected diversity. With a combination of selected morphological features and 4 molecular markers (18S rDNA V8 region, ITS1, ITS2, and COI gene sequences), the following morphotypes and lineages of the Bothriocephalus cuspidatus Cooper, 1917 complex were identified, several of which are specific to their respective fish definitive hosts and may represent separate species: B. cuspidatus sensu stricto from walleye, Sander vitreus (type host), which likely includes a miniature morphotype from Johnny darter, Etheostoma nigrum (both Percidae); Bothriocephalus morphotype from pumpkinseed, Lepomis gibbosus (Centrarchidae); and Bothriocephalus morphotype from rock bass, Ambloplites rupestris (Centrarchidae). The Bothriocephalus morphotype from goldeye, Hiodon alosoides (Hiodontidae), may also represent a separate lineage (possibly Bothriocephalus texomensisSelf, 1954) but requires additional studies. A morphotype from smallmouth bass, Micropterus dolomieu, based on a single specimen, is morphologically and genetically very similar to the morphotype from rock bass. Morphological study of the scolex and strobila of heat-killed and fixed specimens has revealed consistent differences, often subtle, that allowed us to differentiate between these morphotypes.
- MeSH
- Cestoda anatomie a histologie genetika ultrastruktura MeSH
- cestodózy parazitologie veterinární MeSH
- mikroskopie elektronová rastrovací veterinární MeSH
- nemoci ryb parazitologie MeSH
- okounovití parazitologie MeSH
- Perciformes parazitologie MeSH
- pravděpodobnostní funkce MeSH
- ribozomální DNA analýza chemie MeSH
- RNA ribozomální 18S genetika MeSH
- ryby MeSH
- sekvence nukleotidů MeSH
- sekvenční seřazení veterinární MeSH
- sladká voda MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Kanada MeSH
- Spojené státy americké MeSH
Ictalurid catfishes (Siluriformes) in North America harbor proteocephalid tapeworms of the subfamily Corallobothriinae. Type species of 2 of 3 genera of these tapeworms from ictalurids are redescribed, based on museum and newly collected material. Essexiella fimbriata (Essex, 1928) is typified mainly by a wide, umbrella-shaped scolex with a metascolex formed by numerous folds of tissue, anteriorly directed suckers without sphincters, vitellarium bent inwards posteriorly, "flower-shaped" uterus (with anterior, lateral, and posterior diverticula), and a conspicuously pre-equatorial genital atrium. Verified host records of this cestode are only from 3 species of Ictalurus Rafinesque, 1820. Megathylacoides giganteum (Essex, 1928), which seems to be specific to the channel catfish (Ictalurus punctatus), possesses a globular scolex, with a weakly developed metascolex formed by tissue folds posterior to the suckers, anterolaterally directed suckers with large semilunar sphincters, proglottids that are widest at the level of the genital atrium at the anterior third of the proglottid, and uterine diverticula that do not reach the vitelline follicles laterally. A new subfamily, Essexiellinae Scholz and Barčák, is proposed to accommodate species of EssexiellaScholz, de Chambrier, Mariaux and Kuchta, 2011 (type genus), MegathylacoidesJones, Kerley and Sneed, 1956, and CorallotaeniaFreze, 1965 from ictalurid catfishes in the Nearctic Region. These tapeworms possess a metascolex, medullary genital organs, uterus lined with numerous chromophilic cells, pre-equatorial genital atrium, and uterine development of type 2. The new subfamily was monophyletic in all molecular phylogenetic analyses, being most closely related to 3 Neotropical proteocephalids from the redtail catfish, Phractocephalus hemioliopterus (Bloch and Schneider, 1801), but distant from all remaining proteocephalid tapeworms from freshwater fishes in North America.
- MeSH
- Cestoda klasifikace genetika ultrastruktura MeSH
- cestodózy parazitologie veterinární MeSH
- fylogeneze MeSH
- Ictaluridae parazitologie MeSH
- nemoci ryb parazitologie MeSH
- respirační komplex IV genetika MeSH
- ribozomální DNA chemie MeSH
- RNA ribozomální 28S genetika MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
Anaerobic fungi are potent fibre degrading microbes in the equine hindgut, yet our understanding of their diversity and community structure is limited to date. In this preliminary work, using a clone library approach we studied the diversity of anaerobic fungi along six segments of the horse hindgut: caecum, right ventral colon (RVC), left ventral colon (LVC), left dorsal colon (LDC), right dorsal colon (RDC) and rectum. Of the 647 ITS1 clones, 61.7 % were assigned to genus level groups that are so far without any cultured representatives, and 38.0 % were assigned to the cultivated genera Neocallimastix (35.1 %), Orpinomyces (2.3 %), and Anaeromyces (0.6 %). AL1 dominated the group of uncultured anaerobic fungi, particularly in the RVC (88 %) and LDC (97 %). Sequences from the LSU clone library analysis of the LDC, however, split into two distinct phylogenetic clusters with low sequence identity to Caecomyces sp. (94-96 %) and Liebetanzomyces sp. (92 %) respectively. Sequences belonging to cultured Neocallimastix spp. dominated in LVC (81 %) and rectum (75.5 %). Quantification of anaerobic fungi showed significantly higher concentrations in RVC and RDC compared to other segments, which influenced the interpretation of the changes in anaerobic fungal diversity along the horse hindgut. These preliminary findings require further investigation.
- MeSH
- anaerobióza MeSH
- cékum mikrobiologie MeSH
- DNA fungální chemie genetika MeSH
- fylogeneze MeSH
- houby klasifikace genetika MeSH
- kolon mikrobiologie MeSH
- koně mikrobiologie MeSH
- mezerníky ribozomální DNA chemie genetika MeSH
- mykobiom * MeSH
- rektum mikrobiologie MeSH
- ribozomální DNA chemie genetika MeSH
- RNA ribozomální genetika MeSH
- sekvenční analýza DNA MeSH
- shluková analýza MeSH
- střevní mikroflóra * MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
The Pleuroascaceae (Leotiomycetes) is introduced for Phialophora hyalina (section Catenulatae) and its closest relatives based on analyses of DNA sequences of five gene regions and the comparison of cultural and micromorphological characters. The family is resolved as a strongly supported clade that encompasses Pleuroascus and the new anamorph genera Entimomentora and Venustampulla. The latter includes V. parva, a species placed formerly in Scopulariopsis, and V. echinocandica, which is established for the echinocandin-producing isolate BP-5553. Entimomentora includes E. hyalina, a species based on the ex-type strain of Ph. hyalina. Additional isolates identified as Ph. hyalina are distantly related to the Pleuroacaceae and include Psychrophila antarctica (Arachnopezizaceae) and Cryonesomyces dreyfussii, the sole member of the new genus Cryonesomyces (incertae sedis). Isolates identified or deposited as Ph. alba are also not closely related; they include a species for which we propose the name Neobulgaria koningiana (Gelatinodiscaceae) and a second psychrophilic species that we describe as Psychrophila lagodekhiensis. Of the 13 isolates assessed for in vitro antifungal activity, only V. echinocandica inhibited the growth of Candida albicans.
- MeSH
- antifungální látky analýza farmakologie MeSH
- DNA fungální chemie genetika MeSH
- fungální RNA genetika MeSH
- fylogeneze * MeSH
- geny rRNA MeSH
- hmotnostní spektrometrie MeSH
- mikrobiální testy citlivosti MeSH
- mikrobiologické techniky * MeSH
- mikroskopie * MeSH
- Phialophora klasifikace genetika růst a vývoj MeSH
- ribozomální DNA chemie genetika MeSH
- RNA ribozomální 18S genetika MeSH
- RNA ribozomální 28S genetika MeSH
- RNA-polymerasa II genetika MeSH
- sekvenční analýza DNA MeSH
- shluková analýza MeSH
- vysokoúčinná kapalinová chromatografie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
The genus Antrodiella includes resupinate and pileate species of polypores with a dimitic hyphal system, small, globose to cylindrical basidiospores, absence of cystidia, tetrapolar mating system, and haplo-dikaryotic nuclear behavior. Recent studies, however, indicate that Antrodiella is highly polyphyletic, so many of its species have been transferred to other genera. This study reviews the systematic status and diversity of Antrodiella from the Neotropics based, in part, on studies of type specimens. Collections from Brazil were used for molecular analysis of nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS), nuc 28S rDNA (28S), and portions of genes encoding translation elongation factor 1-α (tef1) and the second largest subunit of RNA polymerase II (rpb2). Eight genera are confirmed to include Neotropical species treated as Antrodiella in a broad sense: Aegis, Antrodiella s. str., Flaviporus, Metuloidea, Mycorrhaphium, Rickiopora, Trametopsis, and Trullella. Molecular data reveal the occurrence of two new species, described as Antrodiella trivialis, the only Neotropical species of Antrodiella s. str. known so far, and Mycorrhaphium hispidum. In addition, Antrodiella luteocontexta was found to nest in the genus Aegis, close to the Grifolaceae and Polyporaceae; therefore, the new combination Aegis luteocontexta is proposed. Comments on the eight Antrodiella-related genera as well as species with uncertain taxonomic position are provided, together with a key to their identification.
- MeSH
- DNA fungální chemie genetika MeSH
- elongační faktor 1 genetika MeSH
- fylogeneze * MeSH
- genetická variace * MeSH
- mezerníky ribozomální DNA chemie genetika MeSH
- Polyporales klasifikace genetika izolace a purifikace MeSH
- ribozomální DNA chemie genetika MeSH
- RNA ribozomální 28S genetika MeSH
- RNA-polymerasa II genetika MeSH
- sekvenční analýza DNA MeSH
- shluková analýza MeSH
- tropické klima MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Brazílie MeSH
Most known brown rot-producing species of Polyporales belong to the so-called "Antrodia clade" that largely consists of poroid species. In this study, we use three genetic markers to revise Antrodia s. str., the core group of this clade. We show that a corticioid species with a smooth hymenophore, Phlebia griseoflavescens, belongs to Antrodia s. str. Accordingly, we revise the generic concept of Antrodia s. str. to accommodate this species and two recently described poroid taxa, A. tenerifensis and A. multiformis. In addition, we describe two new poroid species within Antrodia s. str., A. latebrosa from Africa and A. peregrina from East Asia, and provide new documentation for the Southeast Asian species A. parvula based on recent collections from the type location.
- MeSH
- Antrodia klasifikace cytologie genetika izolace a purifikace MeSH
- DNA fungální chemie genetika MeSH
- fylogeneze MeSH
- mezerníky ribozomální DNA chemie genetika MeSH
- mikrobiologie životního prostředí MeSH
- mikroskopie MeSH
- ribozomální DNA chemie genetika MeSH
- sekvenční analýza DNA MeSH
- shluková analýza MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
We report a very rare case of Streptococcus canis native infective endocarditis in a 73-year-old woman living in close contact with her dog. Her echocardiography showed large calcifications in the mitral annulus, massive regurgitation below the posterior leaflet, and adjacent vegetation. Blood culture was positive for Streptococcus Lancefield group G. A coronary artery bypass and mitral valve replacement had to be done. Streptococcus canis was detected in a heart valve using a broad range PCR followed by 16S rRNA and confirmed by tuf gene sequencing, while tissue culture remained negative. The patient was not bitten by her dog nor did she have comorbidities or skin ulcers. She fully recovered.
- MeSH
- bakteriální endokarditida diagnóza mikrobiologie patologie chirurgie MeSH
- DNA bakterií chemie genetika MeSH
- echokardiografie MeSH
- elongační faktor Tu genetika MeSH
- fylogeneze MeSH
- kalcinóza diagnostické zobrazování MeSH
- koronární bypass MeSH
- krev mikrobiologie MeSH
- lidé MeSH
- mitrální chlopeň diagnostické zobrazování patologie chirurgie MeSH
- polymerázová řetězová reakce MeSH
- ribozomální DNA chemie genetika MeSH
- RNA ribozomální 16S genetika MeSH
- sekvenční analýza DNA MeSH
- senioři MeSH
- shluková analýza MeSH
- Streptococcus klasifikace izolace a purifikace MeSH
- streptokokové infekce diagnóza mikrobiologie patologie chirurgie MeSH
- Check Tag
- lidé MeSH
- senioři MeSH
- ženské pohlaví MeSH
- Publikační typ
- kazuistiky MeSH
The objective of this study was to analyze the changes in the microbiota of milk products during fermentation and storage. Two kinds of Yoghurt, one Kefir, and one Acidophilus milk were observed during the fermentation process and storage using 16S rDNA amplicon sequencing. Cow's, goat's, raw and pasteurized milk were also examined. The most represented organisms in all manufactured products were shown to be those of the phylum Firmicutes. In some products, Proteobacteria, Bacteroidetes and Actinobacteria were also present in high amounts.
- MeSH
- Bacteria klasifikace genetika MeSH
- DNA bakterií chemie genetika MeSH
- fermentace MeSH
- fylogeneze MeSH
- kozy MeSH
- kysané mléčné výrobky mikrobiologie MeSH
- mléko MeSH
- ribozomální DNA chemie genetika MeSH
- RNA ribozomální 16S genetika MeSH
- sekvenční analýza DNA MeSH
- skladování potravin MeSH
- skot MeSH
- společenstvo * MeSH
- zvířata MeSH
- Check Tag
- skot MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
Previously, Pyrrhoderma accommodated two polypore species, P. adamantinum and P. scaurum; however, phylogenetic studies indicated that these two species were not congeneric within the Hymenochaetaceae and that P. adamantinum formed a clade with Phellinidium noxium. To resolve the relationships among the two species of Pyrrhoderma and other related taxa, specimens from China, Costa Rica, Singapore, and Thailand were studied from both morphological and phylogenetic perspectives. A new genus, Fulvoderma, is erected to accommodate F. scaurum comb. nov., and a new species, F. australe (the generic type). Pyrrhoderma is delimited to include the generic type, P. sendaiense (a later synonym of P. adamantinum); two new combinations, P. lamaënse comb. nov., and P. noxium comb. nov.; and three new species, P. hainanense, P. thailandicum, and P. yunnanense. In addition, an undescribed lineage including several specimens from subtropical and tropical forests in China, Costa Rica, Singapore, and Thailand also nested within the Pyrrhoderma clade. However, as the voucher specimens are sterile or almost so, they are not described. The concept of Pyrrhoderma was emended to also accommodate species bearing resupinate, effuse-reflexed basidiocarps, hymenial or hyphoid setae, and non-subglobose basidiospores. Keys to Fulvoderma and Pyrrhoderma are provided.
- MeSH
- Basidiomycota klasifikace genetika růst a vývoj izolace a purifikace MeSH
- DNA fungální chemie genetika MeSH
- fungální RNA genetika MeSH
- fylogeneze * MeSH
- geny rRNA MeSH
- mezerníky ribozomální DNA chemie genetika MeSH
- mikroskopie MeSH
- plodnice hub růst a vývoj MeSH
- ribozomální DNA chemie genetika MeSH
- RNA ribozomální 28S genetika MeSH
- sekvenční analýza DNA MeSH
- shluková analýza MeSH
- spory hub cytologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Asie MeSH
- Kostarika MeSH
