BACKGROUND: DNA methylation is likely a key mechanism regulating changes in gene transcription in traits that show temporal fluctuations in response to environmental conditions. To understand the transcriptional role of DNA methylation we need simultaneous within-individual assessment of methylation changes and gene expression changes over time. Within-individual repeated sampling of tissues, which are essential for trait expression is, however, unfeasible (e.g. specific brain regions, liver and ovary for reproductive timing). Here, we explore to what extend between-individual changes in DNA methylation in a tissue accessible for repeated sampling (red blood cells (RBCs)) reflect such patterns in a tissue unavailable for repeated sampling (liver) and how these DNA methylation patterns are associated with gene expression in such inaccessible tissues (hypothalamus, ovary and liver). For this, 18 great tit (Parus major) females were sacrificed at three time points (n = 6 per time point) throughout the pre-laying and egg-laying period and their blood, hypothalamus, ovary and liver were sampled. RESULTS: We simultaneously assessed DNA methylation changes (via reduced representation bisulfite sequencing) and changes in gene expression (via RNA-seq and qPCR) over time. In general, we found a positive correlation between changes in CpG site methylation in RBCs and liver across timepoints. For CpG sites in close proximity to the transcription start site, an increase in RBC methylation over time was associated with a decrease in the expression of the associated gene in the ovary. In contrast, no such association with gene expression was found for CpG site methylation within the gene body or the 10 kb up- and downstream regions adjacent to the gene body. CONCLUSION: Temporal changes in DNA methylation are largely tissue-general, indicating that changes in RBC methylation can reflect changes in DNA methylation in other, often less accessible, tissues such as the liver in our case. However, associations between temporal changes in DNA methylation with changes in gene expression are mostly tissue- and genomic location-dependent. The observation that temporal changes in DNA methylation within RBCs can relate to changes in gene expression in less accessible tissues is important for a better understanding of how environmental conditions shape traits that temporally change in expression in wild populations.
- Klíčová slova
- Accessible and inaccessible tissues, DNA methylation, Great tit, RNA expression, Tissue-specific and tissue-general temporal changes,
- MeSH
- CpG ostrůvky MeSH
- metylace DNA MeSH
- Passeriformes * genetika MeSH
- RNA MeSH
- rozmnožování MeSH
- zpěvní ptáci * genetika MeSH
- zvířata MeSH
- Check Tag
- ženské pohlaví MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- RNA MeSH
Elevational gradients affect the production of plant secondary metabolites through changes in both biotic and abiotic conditions. Previous studies have suggested both elevational increases and decreases in host-plant chemical defences. We analysed the correlation of alkaloids and polyphenols with elevation in a community of nine Ficus species along a continuously forested elevational gradient in Papua New Guinea. We sampled 204 insect species feeding on the leaves of these hosts and correlated their community structure to the focal compounds. Additionally, we explored species richness of folivorous mammals along the gradient. When we accounted for Ficus species identity, we found a general elevational increase in flavonoids and alkaloids. Elevational trends in non-flavonol polyphenols were less pronounced or showed non-linear correlations with elevation. Polyphenols responded more strongly to changes in temperature and humidity than alkaloids. The abundance of insect herbivores decreased with elevation, while the species richness of folivorous mammals showed an elevational increase. Insect community structure was affected mainly by alkaloid concentration and diversity. Although our results show an elevational increase in several groups of metabolites, the drivers behind these trends likely differ. Flavonoids may provide figs with protection against abiotic stressors. In contrast, alkaloids affect insect herbivores and may provide protection against mammalian herbivores and pathogens. Concurrent analysis of multiple compound groups alongside ecological data is an important approach for understanding the selective landscape that shapes plant defences.
- Klíčová slova
- Coleoptera, Folivorous mammals, Herbivory, Lepidoptera, New Guinea, Phenanthroindolizidine alkaloids, Polyphenols, Possum, Tannins,
- MeSH
- alkaloidy metabolismus MeSH
- býložravci * MeSH
- feromony analýza MeSH
- Ficus chemie MeSH
- flavonoidy metabolismus MeSH
- hmyz fyziologie MeSH
- listy rostlin chemie MeSH
- nadmořská výška * MeSH
- potravní řetězec * MeSH
- savci fyziologie MeSH
- společenstvo MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Papua Nová Guinea MeSH
- Názvy látek
- alkaloidy MeSH
- feromony MeSH
- flavonoidy MeSH
Triazine-based graphitic carbon nitride (TGCN) is the most recent addition to the family of graphene-type, two-dimensional, and metal-free materials. Although hailed as a promising low-band-gap semiconductor for electronic applications, so far, only its structure and optical properties have been known. Here, we combine direction-dependent electrical measurements and time-resolved optical spectroscopy to determine the macroscopic conductivity and microscopic charge-carrier mobilities in this layered material "beyond graphene". Electrical conductivity along the basal plane of TGCN is 65 times lower than through the stacked layers, as opposed to graphite. Furthermore, we develop a model for this charge-transport behavior based on observed carrier dynamics and random-walk simulations. Our combined methods provide a path towards intrinsic charge transport in a direction-dependent layered semiconductor for applications in field-effect transistors (FETs) and sensors.
- Klíčová slova
- 2D materials, carbon nitride, layered compounds, semiconductors, thin films,
- Publikační typ
- časopisecké články MeSH
