Nejvíce citovaný článek - PubMed ID 35538166
Complete genome sequence of a novel cytorhabdovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic
In April 2024, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was expanded by 1 new order, 1 new family, 6 new subfamilies, 34 new genera and 270 new species. One class, two orders and six species were renamed. Seven families and 12 genera were moved; ten species were renamed and moved; and nine species were abolished. This article presents the updated taxonomy of Negarnaviricota as currently accepted by the ICTV, providing an essential annual update on the classification of members of this phylum that deepen understandings of their evolution, and supports critical public health measures for virus identification and tracking.
- Klíčová slova
- Aliusviridae, Arenaviridae, Articulavirales, Artoviridae, Aspiviridae, Bornaviridae, Bunyavirales, Bunyaviricetes, Crepuscuviridae, Discoviridae, Elliovirales, Filoviridae, Fimoviridae, Goujianvirales, Hantaviridae, Hareavirales, International Committee on Taxonomy of Viruses (ICTV), Jingchuvirales, Konkoviridae, Lispiviridae, Mononegavirales, Muvirales, Mymonaviridae, Myriaviridae, Naedrevirales, Nairoviridae, Natareviridae, Negarnaviricota, Nyamiviridae, Orthomyxoviridae, Orthornavirae, Paramyxoviridae, Peribunyaviridae, Phasmaviridae, Phenuiviridae, Pneumoviridae, Rhabdoviridae, Riboviria, Sunviridae, Tenuivirus, Tosoviridae, Tospoviridae, Tulasviridae, articulaviral, bunyaviral, bunyavirus, jingchuviral, megaclassification, megataxonomy, mononegaviral, muviral, naedreviral, negarnaviricot, virus classification, virus nomenclature, virus taxonomy,
- MeSH
- DNA řízené RNA-polymerasy * genetika MeSH
- fylogeneze MeSH
- negativní RNA-viry * klasifikace genetika enzymologie MeSH
- virové proteiny * genetika MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- DNA řízené RNA-polymerasy * MeSH
- virové proteiny * MeSH
The genus Betanucleorhabdovirus includes plant viruses with negative sense, non-segmented, single-stranded RNA genomes. Here, we characterized putative novel betanucleorhabdoviruses infecting a medically important plant, elderberry. Total RNA was purified from the leaves of several plants, ribodepleted and sequenced using the Illumina platform. Sequence data analysis led to the identification of thirteen contigs of approximately 13.5 kb, showing a genome structure (3'-N-P-P3-M-G-L-5') typical of plant rhabdoviruses. The detected isolates showed 69.4 to 98.9% pairwise nucleotide identity and had the highest identity among known viruses (64.7-65.9%) with tomato betanucleorhabdovirus 2. A detailed similarity analysis and a phylogenetic analysis allowed us to discriminate the elderberry isolates into five groups, each meeting the sequence-based ICTV demarcation criterion in the Betanucleorhabdovirus genus (lower than 75% identity for the complete genome). Hence, the detected viruses appear to represent five novel, closely related betanucleorhabdoviruses, tentatively named Sambucus betanucleorhabdovirus 1 to 5.
- Klíčová slova
- genetic diversity, high-throughput sequencing, mixed infection, plant rhabdovirus,
- MeSH
- bez černý * MeSH
- fylogeneze * MeSH
- genetická variace * MeSH
- genom virový * MeSH
- listy rostlin virologie MeSH
- nemoci rostlin * virologie MeSH
- Rhabdoviridae genetika izolace a purifikace klasifikace MeSH
- RNA virová genetika MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- RNA virová MeSH