-
Something wrong with this record ?
On parameter synthesis by parallel model checking
J. Barnat, L. Brim, A. Krejcí, A. Streck, D. Safránek, M. Vejnár, T. Vejpustek
Language English Country United States
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
21788679
DOI
10.1109/tcbb.2011.110
Knihovny.cz E-resources
- MeSH
- Algorithms MeSH
- Models, Biological MeSH
- Nonlinear Dynamics MeSH
- Systems Biology MeSH
- Computational Biology methods MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
An important problem in current computational systems biology is to analyze models of biological systems dynamics under parameter uncertainty. This paper presents a novel algorithm for parameter synthesis based on parallel model checking. The algorithm is conceptually universal with respect to the modeling approach employed. We introduce the algorithm, show its scalability, and examine its applicability on several biological models.
Faculty of Informatics Masaryk University Botanická 68a Brno 60200 Czech Republic
FB Mathematik und Informatik Arnimallee 6 14195 Berlin Germany
RECAMO Masaryk Memorial Cancer Institute Zluty kopec 7 65653 Brno Czech Republic
References provided by Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc12034922
- 003
- CZ-PrNML
- 005
- 20160805153952.0
- 007
- ta
- 008
- 121023s2012 xxu f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1109/tcbb.2011.110 $2 doi
- 035 __
- $a (PubMed)21788679
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xxu
- 100 1_
- $a Barnat, Jiří, $d 1977- $7 mub2010575337 $u Faculty of Informatics, Masaryk University, Botanická 68a, Brno 60200, Czech Republic. barnat@fi.muni.cz
- 245 10
- $a On parameter synthesis by parallel model checking / $c J. Barnat, L. Brim, A. Krejcí, A. Streck, D. Safránek, M. Vejnár, T. Vejpustek
- 520 9_
- $a An important problem in current computational systems biology is to analyze models of biological systems dynamics under parameter uncertainty. This paper presents a novel algorithm for parameter synthesis based on parallel model checking. The algorithm is conceptually universal with respect to the modeling approach employed. We introduce the algorithm, show its scalability, and examine its applicability on several biological models.
- 650 _2
- $a algoritmy $7 D000465
- 650 _2
- $a výpočetní biologie $x metody $7 D019295
- 650 _2
- $a biologické modely $7 D008954
- 650 _2
- $a nelineární dynamika $7 D017711
- 650 _2
- $a systémová biologie $7 D049490
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Brim, Lubos $u Systems Biology Laboratory, Faculty of Informatics Masaryk University, Botanická 68a, CZ-60200 Brno, Czech Republic
- 700 1_
- $a Krejčí, Adam $u RECAMO, Masaryk Memorial Cancer Institute, Zluty kopec 7, 65653, Brno, Czech Republic
- 700 1_
- $a Streck, Adam $u FB Mathematik und Informatik, Arnimallee 6, 14195 Berlin, Germany
- 700 1_
- $a Šafránek, David $u Systems Biology Laboratory, Faculty of Informatics Masaryk University, Botanická 68a, CZ-60200 Brno, Czech Republic
- 700 1_
- $a Vejnár, Martin $u Faculty of Informatics, Masaryk University, Botanická 68a, Brno 60200, Czech Republic
- 700 1_
- $a Vejpustek, Tomás $u Faculty of Informatics, Masaryk University, Botanická 68a, Brno 60200, Czech Republic
- 773 0_
- $w MED00181431 $t IEEE/ACM transactions on computational biology and bioinformatics IEEE, ACM $x 1557-9964 $g Roč. 9, č. 3 (2012), s. 693-705
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/21788679 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y p $z 0
- 990 __
- $a 20121023 $b ABA008
- 991 __
- $a 20160805154226 $b ABA008
- 999 __
- $a ok $b bmc $g 956932 $s 792419
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2012 $b 9 $c 3 $d 693-705 $i 1557-9964 $m IEEE/ACM transactions on computational biology and bioinformatics $n IEEE/ACM Trans Comput Biol Bioinform $x MED00181431
- LZP __
- $b NLK112 $a Pubmed-20121023