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MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels
K. Berka, O. Hanák, D. Sehnal, P. Banás, V. Navrátilová, D. Jaiswal, CM. Ionescu, R. Svobodová Vareková, J. Koca, M. Otyepka,
Language English Country England, Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
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PubMed
22553366
DOI
10.1093/nar/gks363
Knihovny.cz E-resources
- MeSH
- Cytochrome P-450 CYP3A chemistry MeSH
- Enzymes chemistry MeSH
- Internet MeSH
- Ion Channels chemistry MeSH
- Protein Conformation MeSH
- Models, Molecular MeSH
- Computer Graphics MeSH
- Ribosomes chemistry MeSH
- Software MeSH
- User-Computer Interface MeSH
- Ribosome Subunits, Large, Archaeal chemistry MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
Biomolecular channels play important roles in many biological systems, e.g. enzymes, ribosomes and ion channels. This article introduces a web-based interactive MOLEonline 2.0 application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of (bio)macromolecular channels, tunnels and pores. Results are presented in a clear manner, making their interpretation easy. For each channel, MOLEonline displays a 3D graphical representation of the channel, its profile accompanied by a list of lining residues and also its basic physicochemical properties. The users can tune advanced parameters when performing a channel search to direct the search according to their needs. The MOLEonline 2.0 application is freely available via the Internet at http://ncbr.muni.cz/mole or http://mole.upol.cz.
References provided by Crossref.org
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