-
Je něco špatně v tomto záznamu ?
Distinct microbial communities associated with buried soils in the Siberian tundra
A. Gittel, J. Bárta, I. Kohoutová, R. Mikutta, S. Owens, J. Gilbert, J. Schnecker, B. Wild, B. Hannisdal, J. Maerz, N. Lashchinskiy, P. Capek, H. Santrůčková, N. Gentsch, O. Shibistova, G. Guggenberger, A. Richter, VL. Torsvik, C. Schleper, T. Urich,
Jazyk angličtina Země Anglie, Velká Británie
Typ dokumentu časopisecké články, práce podpořená grantem
NLK
PubMed Central
od 2011
Europe PubMed Central
od 2011 do Před 1 rokem
ProQuest Central
od 2007-05-01 do Před 1 rokem
Medline Complete (EBSCOhost)
od 2007-05-01 do 2015-12-31
Health & Medicine (ProQuest)
od 2007-05-01 do Před 1 rokem
Oxford Journals Open Access Collection
od 2007
ROAD: Directory of Open Access Scholarly Resources
od 2007
PubMed
24335828
DOI
10.1038/ismej.2013.219
Knihovny.cz E-zdroje
- MeSH
- Archaea klasifikace genetika fyziologie MeSH
- Bacteria klasifikace genetika MeSH
- biodiverzita * MeSH
- ekosystém * MeSH
- enzymy metabolismus MeSH
- fyziologie bakterií * MeSH
- geny rRNA genetika MeSH
- houby klasifikace genetika fyziologie MeSH
- mezerníky ribozomální DNA genetika MeSH
- půda chemie MeSH
- půdní mikrobiologie * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Sibiř MeSH
Cryoturbation, the burial of topsoil material into deeper soil horizons by repeated freeze-thaw events, is an important storage mechanism for soil organic matter (SOM) in permafrost-affected soils. Besides abiotic conditions, microbial community structure and the accessibility of SOM to the decomposer community are hypothesized to control SOM decomposition and thus have a crucial role in SOM accumulation in buried soils. We surveyed the microbial community structure in cryoturbated soils from nine soil profiles in the northeastern Siberian tundra using high-throughput sequencing and quantification of bacterial, archaeal and fungal marker genes. We found that bacterial abundances in buried topsoils were as high as in unburied topsoils. In contrast, fungal abundances decreased with depth and were significantly lower in buried than in unburied topsoils resulting in remarkably low fungal to bacterial ratios in buried topsoils. Fungal community profiling revealed an associated decrease in presumably ectomycorrhizal (ECM) fungi. The abiotic conditions (low to subzero temperatures, anoxia) and the reduced abundance of fungi likely provide a niche for bacterial, facultative anaerobic decomposers of SOM such as members of the Actinobacteria, which were found in significantly higher relative abundances in buried than in unburied topsoils. Our study expands the knowledge on the microbial community structure in soils of Northern latitude permafrost regions, and attributes the delayed decomposition of SOM in buried soils to specific microbial taxa, and particularly to a decrease in abundance and activity of ECM fungi, and to the extent to which bacterial decomposers are able to act as their functional substitutes.
Central Siberian Botanical Garden Siberian Branch of Russian Academy of Sciences Novosibirsk Russia
Department of Biology Centre for Geobiology University of Bergen Bergen Norway
Department of Earth Science Centre for Geobiology University of Bergen Bergen Norway
Department of Ecosystems Biology University of South Bohemia České Budějovice Czech Republic
Institut für Bodenkunde Leibniz Universität Hannover Hannover Germany
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc14063815
- 003
- CZ-PrNML
- 005
- 20140708095414.0
- 007
- ta
- 008
- 140704s2014 enk f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1038/ismej.2013.219 $2 doi
- 035 __
- $a (PubMed)24335828
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a enk
- 100 1_
- $a Gittel, Antje $u 1] Department of Biology, Centre for Geobiology, University of Bergen, Bergen, Norway [2] Austrian Polar Research Institute, Vienna, Austria.
- 245 10
- $a Distinct microbial communities associated with buried soils in the Siberian tundra / $c A. Gittel, J. Bárta, I. Kohoutová, R. Mikutta, S. Owens, J. Gilbert, J. Schnecker, B. Wild, B. Hannisdal, J. Maerz, N. Lashchinskiy, P. Capek, H. Santrůčková, N. Gentsch, O. Shibistova, G. Guggenberger, A. Richter, VL. Torsvik, C. Schleper, T. Urich,
- 520 9_
- $a Cryoturbation, the burial of topsoil material into deeper soil horizons by repeated freeze-thaw events, is an important storage mechanism for soil organic matter (SOM) in permafrost-affected soils. Besides abiotic conditions, microbial community structure and the accessibility of SOM to the decomposer community are hypothesized to control SOM decomposition and thus have a crucial role in SOM accumulation in buried soils. We surveyed the microbial community structure in cryoturbated soils from nine soil profiles in the northeastern Siberian tundra using high-throughput sequencing and quantification of bacterial, archaeal and fungal marker genes. We found that bacterial abundances in buried topsoils were as high as in unburied topsoils. In contrast, fungal abundances decreased with depth and were significantly lower in buried than in unburied topsoils resulting in remarkably low fungal to bacterial ratios in buried topsoils. Fungal community profiling revealed an associated decrease in presumably ectomycorrhizal (ECM) fungi. The abiotic conditions (low to subzero temperatures, anoxia) and the reduced abundance of fungi likely provide a niche for bacterial, facultative anaerobic decomposers of SOM such as members of the Actinobacteria, which were found in significantly higher relative abundances in buried than in unburied topsoils. Our study expands the knowledge on the microbial community structure in soils of Northern latitude permafrost regions, and attributes the delayed decomposition of SOM in buried soils to specific microbial taxa, and particularly to a decrease in abundance and activity of ECM fungi, and to the extent to which bacterial decomposers are able to act as their functional substitutes.
- 650 _2
- $a Archaea $x klasifikace $x genetika $x fyziologie $7 D001105
- 650 _2
- $a Bacteria $x klasifikace $x genetika $7 D001419
- 650 12
- $a fyziologie bakterií $7 D018407
- 650 12
- $a biodiverzita $7 D044822
- 650 _2
- $a mezerníky ribozomální DNA $x genetika $7 D021903
- 650 12
- $a ekosystém $7 D017753
- 650 _2
- $a enzymy $x metabolismus $7 D004798
- 650 _2
- $a houby $x klasifikace $x genetika $x fyziologie $7 D005658
- 650 _2
- $a geny rRNA $x genetika $7 D020459
- 650 _2
- $a půda $x chemie $7 D012987
- 650 12
- $a půdní mikrobiologie $7 D012988
- 651 _2
- $a Sibiř $7 D012800
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Bárta, Jiří $u Department of Ecosystems Biology, University of South Bohemia, České Budějovice, Czech Republic.
- 700 1_
- $a Kohoutová, Iva $u Department of Ecosystems Biology, University of South Bohemia, České Budějovice, Czech Republic.
- 700 1_
- $a Mikutta, Robert $u Institut für Bodenkunde, Leibniz Universität Hannover, Hannover, Germany.
- 700 1_
- $a Owens, Sarah $u 1] Institute of Genomics and Systems Biology, Argonne National Laboratory, Argonne, IL, USA [2] Computation Institute, University of Chicago, Chicago, IL, USA.
- 700 1_
- $a Gilbert, Jack $u 1] Institute of Genomics and Systems Biology, Argonne National Laboratory, Argonne, IL, USA [2] Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA.
- 700 1_
- $a Schnecker, Jörg $u 1] Austrian Polar Research Institute, Vienna, Austria [2] Division of Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
- 700 1_
- $a Wild, Birgit $u 1] Austrian Polar Research Institute, Vienna, Austria [2] Division of Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
- 700 1_
- $a Hannisdal, Bjarte $u Department of Earth Science, Centre for Geobiology, University of Bergen, Bergen, Norway.
- 700 1_
- $a Maerz, Joeran $u Division of Ecosystem Modelling, Institute of Coastal Research, Helmholtz Zentrum Geesthacht, Geesthacht, Germany.
- 700 1_
- $a Lashchinskiy, Nikolay $u Central Siberian Botanical Garden, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia.
- 700 1_
- $a Capek, Petr $u Department of Ecosystems Biology, University of South Bohemia, České Budějovice, Czech Republic.
- 700 1_
- $a Santrůčková, Hana $u Department of Ecosystems Biology, University of South Bohemia, České Budějovice, Czech Republic.
- 700 1_
- $a Gentsch, Norman $u Institut für Bodenkunde, Leibniz Universität Hannover, Hannover, Germany.
- 700 1_
- $a Shibistova, Olga $u 1] Institut für Bodenkunde, Leibniz Universität Hannover, Hannover, Germany [2] VN Sukachev Institute of Forest, Siberian Branch of Russian Academy of Sciences, Akademgorodok, Russia.
- 700 1_
- $a Guggenberger, Georg $u Institut für Bodenkunde, Leibniz Universität Hannover, Hannover, Germany.
- 700 1_
- $a Richter, Andreas $u 1] Austrian Polar Research Institute, Vienna, Austria [2] Division of Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
- 700 1_
- $a Torsvik, Vigdis L $u Department of Biology, Centre for Geobiology, University of Bergen, Bergen, Norway.
- 700 1_
- $a Schleper, Christa $u 1] Department of Biology, Centre for Geobiology, University of Bergen, Bergen, Norway [2] Austrian Polar Research Institute, Vienna, Austria [3] Division of Archaea Biology and Ecogenomics, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.
- 700 1_
- $a Urich, Tim $u 1] Austrian Polar Research Institute, Vienna, Austria [2] Division of Archaea Biology and Ecogenomics, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.
- 773 0_
- $w MED00181091 $t The ISME journal $x 1751-7370 $g Roč. 8, č. 4 (2014), s. 841-53
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/24335828 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20140704 $b ABA008
- 991 __
- $a 20140708095704 $b ABA008
- 999 __
- $a ok $b bmc $g 1031299 $s 862547
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2014 $b 8 $c 4 $d 841-53 $i 1751-7370 $m The ISME journal $n ISME J $x MED00181091
- LZP __
- $a Pubmed-20140704