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Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region
CF. Skibola, SI. Berndt, J. Vijai, L. Conde, Z. Wang, M. Yeager, PI. de Bakker, BM. Birmann, CM. Vajdic, JN. Foo, PM. Bracci, RC. Vermeulen, SL. Slager, S. de Sanjose, SS. Wang, MS. Linet, G. Salles, Q. Lan, G. Severi, H. Hjalgrim, T. Lightfoot,...
Jazyk angličtina Země Spojené státy americké
Typ dokumentu srovnávací studie, časopisecké články, Research Support, N.I.H., Intramural
NLK
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od 2005-01-01
- MeSH
- alely MeSH
- celogenomová asociační studie * MeSH
- folikulární lymfom genetika MeSH
- genetická predispozice k nemoci * MeSH
- haplotypy genetika MeSH
- HLA antigeny genetika MeSH
- jednonukleotidový polymorfismus genetika MeSH
- lidé MeSH
- lidské chromozomy genetika MeSH
- nádorové biomarkery genetika MeSH
- studie případů a kontrol MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- Research Support, N.I.H., Intramural MeSH
- srovnávací studie MeSH
Genome-wide association studies (GWASs) of follicular lymphoma (FL) have previously identified human leukocyte antigen (HLA) gene variants. To identify additional FL susceptibility loci, we conducted a large-scale two-stage GWAS in 4,523 case subjects and 13,344 control subjects of European ancestry. Five non-HLA loci were associated with FL risk: 11q23.3 (rs4938573, p = 5.79 × 10(-20)) near CXCR5; 11q24.3 (rs4937362, p = 6.76 × 10(-11)) near ETS1; 3q28 (rs6444305, p = 1.10 × 10(-10)) in LPP; 18q21.33 (rs17749561, p = 8.28 × 10(-10)) near BCL2; and 8q24.21 (rs13254990, p = 1.06 × 10(-8)) near PVT1. In an analysis of the HLA region, we identified four linked HLA-DRβ1 multiallelic amino acids at positions 11, 13, 28, and 30 that were associated with FL risk (pomnibus = 4.20 × 10(-67) to 2.67 × 10(-70)). Additional independent signals included rs17203612 in HLA class II (odds ratio [OR(per-allele)] = 1.44; p = 4.59 × 10(-16)) and rs3130437 in HLA class I (OR(per-allele) = 1.23; p = 8.23 × 10(-9)). Our findings further expand the number of loci associated with FL and provide evidence that multiple common variants outside the HLA region make a significant contribution to FL risk.
Cancer Control Research BC Cancer Agency Vancouver BC V5Z 1L3 Canada
Cancer Epidemiology Centre Cancer Council Victoria Melbourne VIC 3053 Australia
Cancer Epidemiology Unit University of Oxford Oxford OX3 7LF UK
Cancer Institute New York University School of Medicine New York NY 10016 USA
Cancer Registry of Norway Oslo 0304 Norway
Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública Barcelona 8036 Spain
Department of Biomedical Science University of Cagliari Monserrato Cagliari 09042 Italy
Department of Biostatistics Harvard School of Public Health Boston MA 02115 USA
Department of Biostatistics University of Alabama at Birmingham Birmingham AL 35233 USA
Department of Biostatistics Yale School of Public Health New Haven CT 06520 USA
Department of Cancer Etiology City of Hope Beckman Research Institute Duarte CA 91030 USA
Department of Environmental Health Sciences Yale School of Public Health New Haven CT 06520 USA
Department of Epidemiology Harvard School of Public Health Boston MA 02115 USA
Department of Epidemiology M D Anderson Cancer Center Houston TX 77030 USA
Department of Epidemiology University of North Carolina at Chapel Hill Chapel Hill NC 27599 USA
Department of Family Medicine and Public Health Sciences Wayne State University Detroit MI 48201 USA
Department of Genetic Epidemiology Folkhalsan Research Center Helsinki 00250 Finland
Department of Health Sciences Research Mayo Clinic Rochester MN 55905 USA
Department of Health Sciences University of York York YO10 5DD UK
Department of Health Studies University of Chicago Chicago IL 60637 USA
Department of Hematology Centre Léon Bérard Lyon 69008 France
Department of Hematology Hospices Civils de Lyon Pierre benite Cedex 69495 France
Department of Hematology Ospedale Nord Taranto 74100 Italy
Department of Hematology Université Lyon 1 Pierre benite Cedex 69495 France
Department of Histopathology Douglass Hanly Moir Pathology Macquarie Park NSW 2113 Australia
Department of Medical Epidemiology and Biostatistics Karolinska Institutet Stockholm 17177 Sweden
Department of Medicine Mayo Clinic Rochester MN 55905 USA
Department of Medicine Memorial Sloan Kettering Cancer Center New York NY 10065 USA
Department of Medicine Solna Karolinska Institutet Stockholm 17176 Sweden
Department of Medicine Stanford University School of Medicine Stanford CA 94305 USA
Department of Nutrition Harvard School of Public Health Boston MA 02115 USA
Department of Population Health New York University School of Medicine New York NY 10016 USA
Department of Radiology Oncology and Radiation Science Uppsala University Uppsala 75105 Sweden
Division of Cancer Epidemiology and Genetics National Cancer Institute NIH Bethesda MD 20892 USA
Division of Endocrinology Diabetes and Metabolism The Ohio State University Columbus OH 43210 USA
Division of Public Health Sciences Fred Hutchinson Cancer Research Center Seattle WA 98117 USA
Epidemiology Research Program American Cancer Society Atlanta GA 30303 USA
Genome Sciences Centre BC Cancer Agency Vancouver BC V5Z 1L3 Canada
Health Department BioDonostia Research Institute Basque Region 20014 Spain
Health Studies Sector Westat Rockville MD 20850 USA
Human Genetics Foundation Turin 10126 Italy
Human Genetics Genome Institute of Singapore Singapore 138672 Singapore
Institute for Risk Assessment Sciences Utrecht University Utrecht 3508 TD the Netherlands
Prince of Wales Clinical School University of New South Wales Sydney NSW 2052 Australia
Registre des hémopathies malignes de la Gironde Institut Bergonié Bordeaux Cedex 33076 France
School of Nursing and Human Sciences Dublin City University Dublin 9 Ireland
School of Population and Public Health University of British Columbia Vancouver BC V6T 1Z3 Canada
Sydney School of Public Health The University of Sydney Sydney NSW 2006 Australia
The Tisch Cancer Institute Icahn School of Medicine at Mount Sinai New York NY 10029 USA
Citace poskytuje Crossref.org
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- $a Skibola, Christine F $u Department of Epidemiology, School of Public Health and Comprehensive Cancer Center, Birmingham, AL 35233, USA; Division of Environmental Health Sciences, University of California Berkeley School of Public Health, Berkeley, CA 94720, USA. Electronic address: cskibola@uab.edu.
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- $a Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region / $c CF. Skibola, SI. Berndt, J. Vijai, L. Conde, Z. Wang, M. Yeager, PI. de Bakker, BM. Birmann, CM. Vajdic, JN. Foo, PM. Bracci, RC. Vermeulen, SL. Slager, S. de Sanjose, SS. Wang, MS. Linet, G. Salles, Q. Lan, G. Severi, H. Hjalgrim, T. Lightfoot, M. Melbye, J. Gu, H. Ghesquières, BK. Link, LM. Morton, EA. Holly, A. Smith, LF. Tinker, LR. Teras, A. Kricker, N. Becker, MP. Purdue, JJ. Spinelli, Y. Zhang, GG. Giles, P. Vineis, A. Monnereau, KA. Bertrand, D. Albanes, A. Zeleniuch-Jacquotte, A. Gabbas, CC. Chung, L. Burdett, A. Hutchinson, C. Lawrence, R. Montalvan, L. Liang, J. Huang, B. Ma, J. Liu, HO. Adami, B. Glimelius, Y. Ye, GS. Nowakowski, A. Dogan, CA. Thompson, TM. Habermann, AJ. Novak, M. Liebow, TE. Witzig, GJ. Weiner, M. Schenk, P. Hartge, AJ. De Roos, W. Cozen, D. Zhi, NK. Akers, J. Riby, MT. Smith, M. Lacher, DJ. Villano, A. Maria, E. Roman, E. Kane, RD. Jackson, KE. North, WR. Diver, J. Turner, BK. Armstrong, Y. Benavente, P. Boffetta, P. Brennan, L. Foretova, M. Maynadie, A. Staines, J. McKay, AR. Brooks-Wilson, T. Zheng, TR. Holford, S. Chamosa, R. Kaaks, RS. Kelly, B. Ohlsson, RC. Travis, E. Weiderpass, J. Clavel, E. Giovannucci, P. Kraft, J. Virtamo, P. Mazza, P. Cocco, MG. Ennas, BC. Chiu, JF. Fraumeni, A. Nieters, K. Offit, X. Wu, JR. Cerhan, KE. Smedby, SJ. Chanock, N. Rothman,
- 520 9_
- $a Genome-wide association studies (GWASs) of follicular lymphoma (FL) have previously identified human leukocyte antigen (HLA) gene variants. To identify additional FL susceptibility loci, we conducted a large-scale two-stage GWAS in 4,523 case subjects and 13,344 control subjects of European ancestry. Five non-HLA loci were associated with FL risk: 11q23.3 (rs4938573, p = 5.79 × 10(-20)) near CXCR5; 11q24.3 (rs4937362, p = 6.76 × 10(-11)) near ETS1; 3q28 (rs6444305, p = 1.10 × 10(-10)) in LPP; 18q21.33 (rs17749561, p = 8.28 × 10(-10)) near BCL2; and 8q24.21 (rs13254990, p = 1.06 × 10(-8)) near PVT1. In an analysis of the HLA region, we identified four linked HLA-DRβ1 multiallelic amino acids at positions 11, 13, 28, and 30 that were associated with FL risk (pomnibus = 4.20 × 10(-67) to 2.67 × 10(-70)). Additional independent signals included rs17203612 in HLA class II (odds ratio [OR(per-allele)] = 1.44; p = 4.59 × 10(-16)) and rs3130437 in HLA class I (OR(per-allele) = 1.23; p = 8.23 × 10(-9)). Our findings further expand the number of loci associated with FL and provide evidence that multiple common variants outside the HLA region make a significant contribution to FL risk.
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
- $a Clavel, Jacqueline $u Environmental Epidemiology of Cancer Group, Inserm, Centre for Research in Epidemiology and Population Health (CESP), U1018, Villejuif Cedex 94807, France; UMRS 1018, Université Paris Sud, Villejuif Cedex 94807, France.
- 700 1_
- $a Giovannucci, Edward $u Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA; Department of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA; Department of Nutrition, Harvard School of Public Health, Boston, MA 02115, USA.
- 700 1_
- $a Kraft, Peter $u Department of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA; Department of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA.
- 700 1_
- $a Virtamo, Jarmo $u Department of Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki 00271, Finland.
- 700 1_
- $a Mazza, Patrizio $u Department of Hematology, Ospedale Nord, Taranto 74100, Italy.
- 700 1_
- $a Cocco, Pierluigi $u Department of Public Health, Clinical and Molecular Medicine, University of Cagliari, Monserrato, Cagliari 09042, Italy.
- 700 1_
- $a Ennas, Maria Grazia $u Department of Biomedical Science, University of Cagliari, Monserrato, Cagliari 09042, Italy.
- 700 1_
- $a Chiu, Brian C H $u Department of Health Studies, University of Chicago, Chicago, IL 60637, USA.
- 700 1_
- $a Fraumeni, Joseph F $u Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
- 700 1_
- $a Nieters, Alexandra $u Center for Chronic Immunodeficiency, University Medical Center Freiburg, Freiburg, Baden-Württemberg 79108, Germany.
- 700 1_
- $a Offit, Kenneth $u Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
- 700 1_
- $a Wu, Xifeng $u Department of Epidemiology, M.D. Anderson Cancer Center, Houston, TX 77030, USA.
- 700 1_
- $a Cerhan, James R $u Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
- 700 1_
- $a Smedby, Karin E $u Department of Medicine Solna, Karolinska Institutet, Stockholm 17176, Sweden.
- 700 1_
- $a Chanock, Stephen J $u Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
- 700 1_
- $a Rothman, Nathaniel $u Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
- 773 0_
- $w MED00000254 $t American journal of human genetics $x 1537-6605 $g Roč. 95, č. 4 (2014), s. 462-71
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/25279986 $y Pubmed
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