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Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol
D. Sehnal, OC. Grant,
Jazyk angličtina Země Spojené státy americké
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem
Grantová podpora
U01 CA207824
NCI NIH HHS - United States
- MeSH
- molekulární konformace * MeSH
- polysacharidy chemie MeSH
- sacharidy chemie MeSH
- software * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X ). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol .
Citace poskytuje Crossref.org
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- $a Sehnal, David $u CEITEC - Central European Institute of Technology , Masaryk University Brno , Kamenice 5 , 625 00 Brno-Bohunice , Czech Republic. National Centre for Biomolecular Research , Faculty of Science , Kamenice 5 , 625 00 Brno-Bohunice , Czech Republic. Protein Data Bank in Europe (PDBe), European Molecular Biology Laboratory , European Bioinformatics Institute (EMBL-EBI) , Wellcome Genome Campus , Hinxton , Cambridgeshire CB10 1SD , United Kingdom.
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