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Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol
D. Sehnal, OC. Grant,
Language English Country United States
Document type Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't
Grant support
U01 CA207824
NCI NIH HHS - United States
- MeSH
- Molecular Conformation * MeSH
- Polysaccharides chemistry MeSH
- Carbohydrates chemistry MeSH
- Software * MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Research Support, N.I.H., Extramural MeSH
The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X ). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol .
References provided by Crossref.org
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- $a Sehnal, David $u CEITEC - Central European Institute of Technology , Masaryk University Brno , Kamenice 5 , 625 00 Brno-Bohunice , Czech Republic. National Centre for Biomolecular Research , Faculty of Science , Kamenice 5 , 625 00 Brno-Bohunice , Czech Republic. Protein Data Bank in Europe (PDBe), European Molecular Biology Laboratory , European Bioinformatics Institute (EMBL-EBI) , Wellcome Genome Campus , Hinxton , Cambridgeshire CB10 1SD , United Kingdom.
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- $a The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X ). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol .
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