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G4Hunter web application: a web server for G-quadruplex prediction
V. Brázda, J. Kolomazník, J. Lýsek, M. Bartas, M. Fojta, J. Šťastný, JL. Mergny,
Language English Country Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
NLK
Free Medical Journals
from 1996 to 1 year ago
PubMed Central
from 2007
Open Access Digital Library
from 1996-01-01
Medline Complete (EBSCOhost)
from 1998-01-01
Oxford Journals Open Access Collection
from 1985-01-01 to 2022-09-30
Oxford Journals Open Access Collection
from 1985-01-01
ROAD: Directory of Open Access Scholarly Resources
from 1998
- MeSH
- DNA MeSH
- G-Quadruplexes * MeSH
- Guanine MeSH
- Internet MeSH
- Computers MeSH
- Sequence Analysis, DNA MeSH
- Software MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
References provided by Crossref.org
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- $a Brázda, Václav $u Department of biophysical chemistry and molecular oncology, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic.
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- $a MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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- $a Kolomazník, Jan $u Department of Informatics, Mendel University in Brno, Brno, Czech Republic.
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- $a Bartas, Martin $u Department of biophysical chemistry and molecular oncology, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic. Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
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- $a Fojta, Miroslav $u Department of biophysical chemistry and molecular oncology, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic.
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- $a Šťastný, Jiří $u Department of Informatics, Mendel University in Brno, Brno, Czech Republic. Brno University of Technology, Technicka 2896/2, 61969 Brno, Czech Republic.
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- $a Mergny, Jean-Louis $u Department of biophysical chemistry and molecular oncology, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic. ARNA Laboratory, Inserm U1212, CNRS UMR5320, IECB, Université de Bordeaux, Pessac, France.
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