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Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M. Sagova-Mareckova, J. Boenigk, A. Bouchez, K. Cermakova, T. Chonova, T. Cordier, U. Eisendle, T. Elersek, S. Fazi, T. Fleituch, L. Frühe, M. Gajdosova, N. Graupner, A. Haegerbaeumer, AM. Kelly, J. Kopecky, F. Leese, P. Nõges, S. Orlic, K....
Jazyk angličtina Země Velká Británie
Typ dokumentu časopisecké články, přehledy
- MeSH
- Archaea genetika MeSH
- bioindikátory MeSH
- biologický monitoring * MeSH
- ekosystém * MeSH
- monitorování životního prostředí MeSH
- sladká voda MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
Bioindication has become an indispensable part of water quality monitoring in most countries of the world, with the presence and abundance of bioindicator taxa, mostly multicellular eukaryotes, used for biotic indices. In contrast, microbes (bacteria, archaea and protists) are seldom used as bioindicators in routine assessments, although they have been recognized for their importance in environmental processes. Recently, the use of molecular methods has revealed unexpected diversity within known functional groups and novel metabolic pathways that are particularly important in energy and nutrient cycling. In various habitats, microbial communities respond to eutrophication, metals, and natural or anthropogenic organic pollutants through changes in diversity and function. In this review, we evaluated the common trends in these changes, documenting that they have value as bioindicators and can be used not only for monitoring but also for improving our understanding of the major processes in lotic and lentic environments. Current knowledge provides a solid foundation for exploiting microbial taxa, community structures and diversity, as well as functional genes, in novel monitoring programs. These microbial community measures can also be combined into biotic indices, improving the resolution of individual bioindicators. Here, we assess particular molecular approaches complemented by advanced bioinformatic analysis, as these are the most promising with respect to detailed bioindication value. We conclude that microbial community dynamics are a missing link important for our understanding of rapid changes in the structure and function of aquatic ecosystems, and should be addressed in the future environmental monitoring of freshwater ecosystems.
Agency Akvatorija 11 krajiške divizije 49 11090 Belgrade Serbia
Aquatic Ecosystem Resarch University of Duisburg Essen Universitaetsstrasse 5 D 45141 Essen Germany
Biodiversity University of Duisburg Essen Universitaetsstraße 5 45141 Essen Germany
Department of Biology Faculty of Science Lund University Sölvegatan 37 223 62 Lund Sweden
Department of Biosciences University of Oslo P O Box 1066 Blindern NO 0316 Oslo Norway
Dept of Animal Ecology Bielefeld University Konsequenz 45 33615 Bielefeld Germany
Dept of Ecology Faculty of Science Charles University Viničná 7 12844 Prague Czechia
Ecology Group Technische Universität Kaiserslautern D 67663 Kaiserslautern Germany
ID Gene Ecodiagnostics Campus Biotech Innovation Park 15 av Sécheron 1202 Geneva Switzerland
Institute of Hydrobiology Biology Centre CAS Branišovská 31 370 05 České Budějovice Czechia
Institute of Oceanology Polish Academy of Sciences Powstańców Warszawy 55 81 712 Sopot Poland
Institute Ruđer Bošković Bijenička 54 10000 Zagreb Croatia
Ministry of Environmental Protection Omladinskih brigada 1 11070 Belgrade Serbia
National Institute of Biology Vecna pot 111 SI 1000 Ljubljana Slovenia
Norwegian Veterinary Institute P O Box 750 Sentrum NO 0106 Oslo Norway
UMR CARRTEL INRAE UMR Carrtel 75 av de Corzent FR 74203 Thonon les Bains cedex France
University of Salzburg Hellbrunnerstraße 34 5020 Salzburg Austria
University Savoie Mont Blanc UMR CARRTEL FR 73370 Le Bourget du Lac France
Citace poskytuje Crossref.org
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- $a Ságová-Marečková, Markéta $u Dept. of Microbiology, Nutrition and Dietetics, Czech University of Life Sciences, Kamýcká 129, Prague 6, 16500, Czechia. Electronic address: mareckova@af.czu.cz $7 xx0095954
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- $a Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring / $c M. Sagova-Mareckova, J. Boenigk, A. Bouchez, K. Cermakova, T. Chonova, T. Cordier, U. Eisendle, T. Elersek, S. Fazi, T. Fleituch, L. Frühe, M. Gajdosova, N. Graupner, A. Haegerbaeumer, AM. Kelly, J. Kopecky, F. Leese, P. Nõges, S. Orlic, K. Panksep, J. Pawlowski, A. Petrusek, JJ. Piggott, JC. Rusch, R. Salis, J. Schenk, K. Simek, A. Stovicek, DA. Strand, MI. Vasquez, T. Vrålstad, S. Zlatkovic, M. Zupancic, T. Stoeck
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- $a Bioindication has become an indispensable part of water quality monitoring in most countries of the world, with the presence and abundance of bioindicator taxa, mostly multicellular eukaryotes, used for biotic indices. In contrast, microbes (bacteria, archaea and protists) are seldom used as bioindicators in routine assessments, although they have been recognized for their importance in environmental processes. Recently, the use of molecular methods has revealed unexpected diversity within known functional groups and novel metabolic pathways that are particularly important in energy and nutrient cycling. In various habitats, microbial communities respond to eutrophication, metals, and natural or anthropogenic organic pollutants through changes in diversity and function. In this review, we evaluated the common trends in these changes, documenting that they have value as bioindicators and can be used not only for monitoring but also for improving our understanding of the major processes in lotic and lentic environments. Current knowledge provides a solid foundation for exploiting microbial taxa, community structures and diversity, as well as functional genes, in novel monitoring programs. These microbial community measures can also be combined into biotic indices, improving the resolution of individual bioindicators. Here, we assess particular molecular approaches complemented by advanced bioinformatic analysis, as these are the most promising with respect to detailed bioindication value. We conclude that microbial community dynamics are a missing link important for our understanding of rapid changes in the structure and function of aquatic ecosystems, and should be addressed in the future environmental monitoring of freshwater ecosystems.
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