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The hCOMET project: International database comparison of results with the comet assay in human biomonitoring. Baseline frequency of DNA damage and effect of main confounders
M. Milić, M. Ceppi, M. Bruzzone, A. Azqueta, G. Brunborg, R. Godschalk, G. Koppen, S. Langie, P. Møller, JP. Teixeira, A. Alija, D. Anderson, V. Andrade, C. Andreoli, F. Asllani, EE. Bangkoglu, M. Barančoková, N. Basaran, E. Boutet-Robinet, A....
Jazyk angličtina Země Nizozemsko
Typ dokumentu časopisecké články, práce podpořená grantem, přehledy
Odkazy
PubMed
34083035
DOI
10.1016/j.mrrev.2021.108371
Knihovny.cz E-zdroje
- MeSH
- biologické markery krev MeSH
- kometový test metody MeSH
- lidé MeSH
- poškození DNA genetika fyziologie MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- přehledy MeSH
The alkaline comet assay, or single cell gel electrophoresis, is one of the most popular methods for assessing DNA damage in human population. One of the open issues concerning this assay is the identification of those factors that can explain the large inter-individual and inter-laboratory variation. International collaborative initiatives such as the hCOMET project - a COST Action launched in 2016 - represent a valuable tool to meet this challenge. The aims of hCOMET were to establish reference values for the level of DNA damage in humans, to investigate the effect of host factors, lifestyle and exposure to genotoxic agents, and to compare different sources of assay variability. A database of 19,320 subjects was generated, pooling data from 105 studies run by 44 laboratories in 26 countries between 1999 and 2019. A mixed random effect log-linear model, in parallel with a classic meta-analysis, was applied to take into account the extensive heterogeneity of data, due to descriptor, specimen and protocol variability. As a result of this analysis interquartile intervals of DNA strand breaks (which includes alkali-labile sites) were reported for tail intensity, tail length, and tail moment (comet assay descriptors). A small variation by age was reported in some datasets, suggesting higher DNA damage in oldest age-classes, while no effect could be shown for sex or smoking habit, although the lack of data on heavy smokers has still to be considered. Finally, highly significant differences in DNA damage were found for most exposures investigated in specific studies. In conclusion, these data, which confirm that DNA damage measured by the comet assay is an excellent biomarker of exposure in several conditions, may contribute to improving the quality of study design and to the standardization of results of the comet assay in human populations.
Biostatistics Unit San Martino Policlinic Hospital Genoa Italy
Department NEUROFARBA University of Florence Viale G Pieraccini 6 50139 Florence Italy
Department of Biology University of Prishtina George Bush N N 10000 Prishtina Kosovo
Department of Environment and Health Istituto Superiore di Sanità Viale Regina Elena 299 Rome Italy
Department of Nutritional Sciences University of Vienna Althanstrasse 14 1090 Vienna Austria
Department of Occupational and Environmental Medicine Epidemiology and Hygiene Italy
Department of Pharmaceutical Sciences University of Perugia Via del Giochetto 06122 Perugia Italy
Department of Pharmaceutical Toxicology Faculty of Pharmacy Hacettepe University Ankara Turkey
Department of Pharmacology and Toxicology University of Navarra C Irunlarrea 1 31008 Pamplona Spain
Flemish Institute of Technological Research Environmental Risk and Health unit VITO BIOMo Belgium
IdiSNA Navarra Institute for Health Research C Irunlarrea 3 31008 Pamplona Spain
Institute of Biology Medical Faculty Slovak Medical University Limbova 12 83303 Bratislava Slovakia
Memorial Sloan Kettering Cancer Center Epidemiology and Biostatistics New York New York 10065 USA
NILU Health Effects Laboratory Kjeller Norway
Toxalim Université de Toulouse INRAE ENVT INP Purpan UPS Toulouse France
Toxicology Department Faculty of Pharmacy Gazi University Ankara Turkey
Toxicology Department Faculty of Pharmacy Istinye University Istanbul Turkey
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- $a Milić, Mirta $u Mutagenesis Unit, Institute for Medical Research and Occupational Health, Ksaverska cesta 2, 10000, Zagreb, Croatia
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- $a The hCOMET project: International database comparison of results with the comet assay in human biomonitoring. Baseline frequency of DNA damage and effect of main confounders / $c M. Milić, M. Ceppi, M. Bruzzone, A. Azqueta, G. Brunborg, R. Godschalk, G. Koppen, S. Langie, P. Møller, JP. Teixeira, A. Alija, D. Anderson, V. Andrade, C. Andreoli, F. Asllani, EE. Bangkoglu, M. Barančoková, N. Basaran, E. Boutet-Robinet, A. Buschini, D. Cavallo, C. Costa Pereira, C. Costa, S. Costa, J. Da Silva, C. Del Boˊ, V. Dimitrijević Srećković, N. Djelić, M. Dobrzyńska, Z. Duračková, M. Dvořáková, G. Gajski, S. Galati, O. García Lima, L. Giovannelli, IA. Goroshinskaya, A. Grindel, KB. Gutzkow, A. Hernández, C. Hernández, KB. Holven, I. Ibero-Baraibar, I. Ottestad, E. Kadioglu, A. Kažimirová, E. Kuznetsova, C. Ladeira, B. Laffon, P. Lamonaca, P. Lebailly, H. Louro, T. Mandina Cardoso, F. Marcon, R. Marcos, M. Moretti, S. Moretti, M. Najafzadeh, Z. Nemeth, M. Neri, B. Novotna, I. Orlow, Z. Paduchova, S. Pastor, H. Perdry, B. Spremo-Potparević, D. Ramadhani, P. Riso, P. Rohr, E. Rojas, P. Rossner, A. Safar, S. Sardas, MJ. Silva, N. Sirota, B. Smolkova, M. Staruchova, R. Stetina, H. Stopper, EI. Surikova, SM. Ulven, CL. Ursini, V. Valdiglesias, M. Valverde, P. Vodicka, K. Volkovova, KH. Wagner, L. Živković, M. Dušinská, AR. Collins, S. Bonassi
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- $a The alkaline comet assay, or single cell gel electrophoresis, is one of the most popular methods for assessing DNA damage in human population. One of the open issues concerning this assay is the identification of those factors that can explain the large inter-individual and inter-laboratory variation. International collaborative initiatives such as the hCOMET project - a COST Action launched in 2016 - represent a valuable tool to meet this challenge. The aims of hCOMET were to establish reference values for the level of DNA damage in humans, to investigate the effect of host factors, lifestyle and exposure to genotoxic agents, and to compare different sources of assay variability. A database of 19,320 subjects was generated, pooling data from 105 studies run by 44 laboratories in 26 countries between 1999 and 2019. A mixed random effect log-linear model, in parallel with a classic meta-analysis, was applied to take into account the extensive heterogeneity of data, due to descriptor, specimen and protocol variability. As a result of this analysis interquartile intervals of DNA strand breaks (which includes alkali-labile sites) were reported for tail intensity, tail length, and tail moment (comet assay descriptors). A small variation by age was reported in some datasets, suggesting higher DNA damage in oldest age-classes, while no effect could be shown for sex or smoking habit, although the lack of data on heavy smokers has still to be considered. Finally, highly significant differences in DNA damage were found for most exposures investigated in specific studies. In conclusion, these data, which confirm that DNA damage measured by the comet assay is an excellent biomarker of exposure in several conditions, may contribute to improving the quality of study design and to the standardization of results of the comet assay in human populations.
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