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Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
J. Cohen-Adad, E. Alonso-Ortiz, M. Abramovic, C. Arneitz, N. Atcheson, L. Barlow, RL. Barry, M. Barth, M. Battiston, C. Büchel, M. Budde, V. Callot, AJE. Combes, B. De Leener, M. Descoteaux, PL. de Sousa, M. Dostál, J. Doyon, A. Dvorak, F....
Language English Country Great Britain
Document type Dataset, Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't
Grant support
R00 EB016689
NIBIB NIH HHS - United States
European Research Council - International
K23 NS104211
NINDS NIH HHS - United States
R01 EB027779
NIBIB NIH HHS - United States
Wellcome Trust - United Kingdom
L30 NS108301
NINDS NIH HHS - United States
NLK
Directory of Open Access Journals
from 2014
Free Medical Journals
from 2014
Nature Open Access
from 2014-12-01
PubMed Central
from 2014
Europe PubMed Central
from 2014
ProQuest Central
from 2014-03-01
Open Access Digital Library
from 2014-01-01
Open Access Digital Library
from 2014-01-01
Health & Medicine (ProQuest)
from 2014-03-01
ROAD: Directory of Open Access Scholarly Resources
from 2014
Springer Nature OA/Free Journals
from 2014-12-01
- MeSH
- Adult MeSH
- Humans MeSH
- Magnetic Resonance Imaging * MeSH
- Spinal Cord diagnostic imaging ultrastructure MeSH
- Neuroimaging * MeSH
- Image Processing, Computer-Assisted MeSH
- Reproducibility of Results MeSH
- Check Tag
- Adult MeSH
- Humans MeSH
- Male MeSH
- Female MeSH
- Publication type
- Journal Article MeSH
- Dataset MeSH
- Research Support, Non-U.S. Gov't MeSH
- Research Support, N.I.H., Extramural MeSH
In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/ . The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord.
Aix Marseille Univ CNRS CRMBM Marseille France
APHM Hopital Universitaire Timone CEMEREM Marseille France
Brain MRI 3T Research Centre IRCCS Mondino Foundation Pavia Italy
Centre de Recherche CHUS CIMS Sherbrooke Canada
Centre for Advanced Imaging The University of Queensland Brisbane Australia
CHU Sainte Justine Research Centre Montreal QC Canada
CREF Museo storico della fisica e Centro studi e ricerche Enrico Fermi Rome Italy
CUBRIC Cardiff University Wales UK
Department of Brain and Behavioural Sciences University of Pavia Pavia Italy
Department of Computer and Software Engineering Polytechnique Montreal Montreal Canada
Department Of Medicine University of British Columbia Vancouver BC Canada
Department of Neurosurgery Medical College of Wisconsin Milwaukee WI USA
Department of Physics and Astronomy University of British Columbia Vancouver BC Canada
Department of Psychology University of Chinese Academy of Sciences Beijing China
Department of Radiology and Medical Informatics University of Geneva Geneva Switzerland
Department of Radiology Beijing Tiantan Hospital Capital Medical University Beijing China
Department of Radiology Harvard Medical School Boston MA USA
Department of Radiology Juntendo University School of Medicine Tokyo Japan
Department of Radiology Swiss Paraplegic Centre Nottwil Switzerland
Department of Radiology the University of Tokyo Tokyo Japan
Department of Radiology Toho University Omori Medical Center Tokyo Japan
Department of Radiology University of British Columbia Vancouver BC Canada
Department of Radiology Vanderbilt University Medical Center Nashville TN USA
Department of Systems Neuroscience University Medical Center Hamburg Eppendorf Hamburg Germany
Departments of Radiology Pathology and Laboratory Medicine Physics and Astronomy
E health Centre Universitat Oberta de Catalunya Barcelona Spain
Epilepsy Society MRI Unit Chalfont St Peter UK
Fondation Campus Biotech Genève 1202 Geneva Switzerland
Functional Neuroimaging Unit CRIUGM Université de Montréal Montreal QC Canada
Harvard Massachusetts Institute of Technology Health Sciences and Technology Cambridge MA USA
Institute of Nanotechnology CNR Rome Italy
International Collaboration on Repair Discoveries University of British Columbia Vancouver BC Canada
IRCCS Fondazione Don Carlo Gnocchi ONLUS Milan Italy
IRCCS Santa Lucia Foundation Rome Italy
Max Planck Institute for Human Cognitive and Brain Sciences Leipzig Germany
McConnell Brain Imaging Centre Montreal Neurological Institute McGill University Montreal QC Canada
Mila Quebec AI Institute Montreal QC Canada
MR Clinical Science Philips Healthcare Markham ON Canada
NeuroPoly Lab Institute of Biomedical Engineering Polytechnique Montreal Montreal QC Canada
Neuroradiology Section Vall d'Hebron University Hospital Barcelona Spain
Richard M Lucas Center Stanford University School of Medicine Stanford CA USA
School of Biomedical Sciences Faculty of Medicine The University of Queensland Brisbane Australia
Spinal Cord Injury Center Balgrist University of Zurich Zurich Switzerland
Université de Strasbourg CNRS ICube Strasbourg France
University of Oklahoma Health Sciences Center Oklahoma City OK USA
References provided by Crossref.org
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