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Analyses of the Updated "Animal rDNA Loci Database" with an Emphasis on Its New Features
J. Sochorová, F. Gálvez, R. Matyášek, S. Garcia, A. Kovařík
Language English Country Switzerland
Document type Journal Article
Grant support
19-03442S
Czech Science Foundation
20-28029S
Czech Science Foundation
NLK
Free Medical Journals
from 2000
Freely Accessible Science Journals
from 2000
PubMed Central
from 2007
Europe PubMed Central
from 2007
ProQuest Central
from 2000-03-01
Open Access Digital Library
from 2000-01-01
Open Access Digital Library
from 2007-01-01
Health & Medicine (ProQuest)
from 2000-03-01
ROAD: Directory of Open Access Scholarly Resources
from 2000
PubMed
34768834
DOI
10.3390/ijms222111403
Knihovny.cz E-resources
- MeSH
- Databases, Genetic MeSH
- Species Specificity MeSH
- Karyotype MeSH
- Karyotyping MeSH
- Evolution, Molecular MeSH
- DNA, Ribosomal genetics MeSH
- RNA, Ribosomal, 5S genetics MeSH
- RNA, Ribosomal genetics MeSH
- Animals MeSH
- Check Tag
- Animals MeSH
- Publication type
- Journal Article MeSH
We report on a major update to the animal rDNA loci database, which now contains cytogenetic information for 45S and 5S rDNA loci in more than 2600 and 1000 species, respectively.The data analyses show the following: (i) A high variability in 5S and 45S loci numbers, with both showing 50-fold or higher variability. However, karyotypes with an extremely high number of loci were rare, and medians generally converged to two 5S sites and two 45S rDNA sites per diploid genome. No relationship was observed between the number of 5S and 45S loci. (ii) The position of 45S rDNA on sex chromosomes was relatively frequent in some groups, particularly in arthropods (14% of karyotypes). Furthermore, 45S rDNA was almost exclusively located in microchromosomes when these were present (in birds and reptiles). (iii) The proportion of active NORs (positively stained with silver staining methods) progressively decreased with an increasing number of 45S rDNA loci, and karyotypes with more than 12 loci showed, on average, less than 40% of active loci. In conclusion, the updated version of the database provides some new insights into the organization of rRNA genes in chromosomes. We expect that its updated content will be useful for taxonomists, comparative cytogeneticists, and evolutionary biologists. .
Bioscripts Centro de Investigación y Desarrollo de Recursos Científicos 41012 Sevilla Spain
Institut Botànic de Barcelona Passeig del Migdia s n 08038 Barcelona Spain
Institute of Biophysics Academy of Sciences of the Czech Republic 61265 Brno Czech Republic
References provided by Crossref.org
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