-
Je něco špatně v tomto záznamu ?
Flagellimonas algarum sp. nov., isolated from dense mats of filamentous algae
J. Yoon, M. Yasumoto-Hirose, H. Kasai
Jazyk angličtina Země Česko
Typ dokumentu časopisecké články
- MeSH
- DNA bakterií genetika chemie MeSH
- Flavobacteriaceae * klasifikace izolace a purifikace genetika MeSH
- fosfolipidy analýza MeSH
- fylogeneze MeSH
- genom bakteriální MeSH
- hybridizace nukleových kyselin MeSH
- mastné kyseliny analýza MeSH
- RNA ribozomální 16S genetika MeSH
- sekvenční analýza DNA MeSH
- techniky typizace bakterií MeSH
- vitamin K 2 analýza analogy a deriváty MeSH
- zastoupení bazí MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Japonsko MeSH
A novel Gram-stain-negative, strictly aerobic, rod-shaped, light-yellow-pigmented, and chemo-organoheterotrophic bacterium, designated DF-77T, was isolated from dense mats of filamentous algae collected in March 2004 at Okinawa in Japan. The microorganism grew at 0-2.0% NaCl concentrations (w/v), pH 6.0-9.0, and 20-30 °C. The 16S rRNA gene sequence-based phylogenetic tree demonstrated that the strain DF-77T is a novel member of the family Flavobacteriaceae and was greatly related to Flagellimonas nanhaiensis SM1704T with sequence similarity of 95.5%. The main fatty acids were iso-C15:1 G, iso-C15:0, and iso-C17:0 3-OH, and the only isoprenoid quinone was menaquinone-6. The dominant polar lipids were phosphatidylethanolamine, two unidentified aminolipids, an unidentified phosphoaminolipid, and four unidentified lipids. The genome size of strain DF-77T was 3.60 Mbp with a DNA G + C content of 47.5%. The average nucleotide identity (ANI) value between the genomes of strain DF-77T and its closely related species was 69.8-70.7%. The digital DNA - DNA hybridization (dDDH) value of strain DF-77T with the strain of F. nanhaiensis SM1704T was 16.8%. The genome of the strain DF-77T revealed that it encoded several genes involved in bio-macromolecule degradation, indicating a high potential for producing industrially useful enzymes. Consequently, the strain is described as a new species in the genus Flagellimonas, for which the name Flagellimonas algarum sp. nov., is proposed with the type strain DF-77T (= KCTC 72791T = NBRC 114251T).
College of Pharmacy Keimyung University 1095 Dalgubeoldaero Dalseo Gu Daegu 42601 Republic of Korea
Marine Biotechnology Institute 3 75 1 Heita Kamaishi Iwate 026 0001 Japan
Tropical Technology Plus 12 75 Suzaki Uruma Okinawa 904 2234 Japan
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc25013012
- 003
- CZ-PrNML
- 005
- 20250605092908.0
- 007
- ta
- 008
- 250605s2025 xr f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1007/s12223-024-01200-0 $2 doi
- 035 __
- $a (PubMed)39331279
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xr
- 100 1_
- $a Yoon, Jaewoo $u College of Pharmacy, Keimyung University, 1095 Dalgubeoldaero, Dalseo-Gu, Daegu, 42601, Republic of Korea. jwyoon@kmu.ac.kr $1 https://orcid.org/0000000186998112
- 245 10
- $a Flagellimonas algarum sp. nov., isolated from dense mats of filamentous algae / $c J. Yoon, M. Yasumoto-Hirose, H. Kasai
- 520 9_
- $a A novel Gram-stain-negative, strictly aerobic, rod-shaped, light-yellow-pigmented, and chemo-organoheterotrophic bacterium, designated DF-77T, was isolated from dense mats of filamentous algae collected in March 2004 at Okinawa in Japan. The microorganism grew at 0-2.0% NaCl concentrations (w/v), pH 6.0-9.0, and 20-30 °C. The 16S rRNA gene sequence-based phylogenetic tree demonstrated that the strain DF-77T is a novel member of the family Flavobacteriaceae and was greatly related to Flagellimonas nanhaiensis SM1704T with sequence similarity of 95.5%. The main fatty acids were iso-C15:1 G, iso-C15:0, and iso-C17:0 3-OH, and the only isoprenoid quinone was menaquinone-6. The dominant polar lipids were phosphatidylethanolamine, two unidentified aminolipids, an unidentified phosphoaminolipid, and four unidentified lipids. The genome size of strain DF-77T was 3.60 Mbp with a DNA G + C content of 47.5%. The average nucleotide identity (ANI) value between the genomes of strain DF-77T and its closely related species was 69.8-70.7%. The digital DNA - DNA hybridization (dDDH) value of strain DF-77T with the strain of F. nanhaiensis SM1704T was 16.8%. The genome of the strain DF-77T revealed that it encoded several genes involved in bio-macromolecule degradation, indicating a high potential for producing industrially useful enzymes. Consequently, the strain is described as a new species in the genus Flagellimonas, for which the name Flagellimonas algarum sp. nov., is proposed with the type strain DF-77T (= KCTC 72791T = NBRC 114251T).
- 650 _2
- $a fylogeneze $7 D010802
- 650 _2
- $a RNA ribozomální 16S $x genetika $7 D012336
- 650 _2
- $a mastné kyseliny $x analýza $7 D005227
- 650 _2
- $a zastoupení bazí $7 D001482
- 650 _2
- $a DNA bakterií $x genetika $x chemie $7 D004269
- 650 12
- $a Flavobacteriaceae $x klasifikace $x izolace a purifikace $x genetika $7 D041965
- 650 _2
- $a techniky typizace bakterií $7 D015373
- 650 _2
- $a vitamin K 2 $x analýza $x analogy a deriváty $7 D024482
- 650 _2
- $a sekvenční analýza DNA $7 D017422
- 650 _2
- $a genom bakteriální $7 D016680
- 650 _2
- $a hybridizace nukleových kyselin $7 D009693
- 650 _2
- $a fosfolipidy $x analýza $7 D010743
- 651 _2
- $a Japonsko $7 D007564
- 655 _2
- $a časopisecké články $7 D016428
- 700 1_
- $a Yasumoto-Hirose, Mina $u Marine Biotechnology Institute, 3-75-1 Heita, Kamaishi, Iwate, 026-0001, Japan $u Tropical Technology Plus, 12-75 Suzaki, Uruma, Okinawa, 904-2234, Japan
- 700 1_
- $a Kasai, Hiroaki $u Sanriku Education and Research Center for Marine Biosciences, Kitasato University School of Marine Biosciences, 160-4 Utou, Okirai, Sanriku-Cho, Ofunato, Iwate, 022-0101, Japan
- 773 0_
- $w MED00011005 $t Folia microbiologica $x 1874-9356 $g Roč. 70, č. 2 (2025), s. 455-462
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/39331279 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y - $z 0
- 990 __
- $a 20250605 $b ABA008
- 991 __
- $a 20250605092901 $b ABA008
- 999 __
- $a ok $b bmc $g 2333589 $s 1250122
- BAS __
- $a 3
- BAS __
- $a PreBMC-MEDLINE
- BMC __
- $a 2025 $b 70 $c 2 $d 455-462 $e 20240927 $i 1874-9356 $m Folia microbiologica $n Folia Microbiol (Praha) $x MED00011005
- LZP __
- $a Pubmed-20250605