Construction of chromosome-specific DNA libraries covering the whole genome of field bean (Vicia faba L.)
Jazyk angličtina Země Nizozemsko Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
8939365
DOI
10.1007/bf02261781
Knihovny.cz E-zdroje
- MeSH
- chromozomy genetika MeSH
- DNA primery chemie MeSH
- DNA rostlinná genetika MeSH
- elektroforéza v agarovém gelu MeSH
- Fabaceae genetika MeSH
- genová dávka MeSH
- genová knihovna * MeSH
- klonování DNA MeSH
- léčivé rostliny * MeSH
- mapování chromozomů MeSH
- polymerázová řetězová reakce MeSH
- průtoková cytometrie MeSH
- rekombinantní DNA MeSH
- satelitní DNA genetika MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- DNA primery MeSH
- DNA rostlinná MeSH
- rekombinantní DNA MeSH
- satelitní DNA MeSH
Recombinant DNA libraries were constructed for seven chromosome types isolated from two translocation lines of field bean (Vicia faba L.) with reconstructed karyotypes. The chromosomes were selected so that the set of libraries covers the whole V. faba genome more than once. Individual chromosome types were highly purified by flow sorting, and their DNA was amplified by degenerate oligonucleotide-primed (DOP) polymerase chain reaction (PCR) and cloned into a plasmid vector. The choice of restriction site present in PCR primer and refinement of cloning protocol resulted in high cloning efficiency and allowed generation of libraries consisting of about 10(5) clones from 250 or 1000 sorted chromosomes. The insert size ranged between 50 and 2200 bp and the mean length estimated in individual libraries varied between 310 and 487 bp. Hybridization of cloned fragments with labelled genomic DNA showed that about 60% of inserts represented unique or low-copy sequences. The suitability of the libraries for genome mapping was demonstrated by isolation of clones containing microsatellite motifs.
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Nucleic Acids Res. 1991 Jan 11;19(1):184 PubMed
Cytogenet Cell Genet. 1994;66(4):277-82 PubMed
Theor Appl Genet. 1993 Feb;85(8):937-45 PubMed
Planta. 1992 Aug;188(1):93-8 PubMed
Genomics. 1992 Jul;13(3):718-25 PubMed
Chromosome Res. 1995 Mar;3(2):94-100 PubMed
Mol Gen Genet. 1994 Mar;242(5):551-8 PubMed
Chromosoma. 1993 Nov;102(9):591-8 PubMed
Cytogenet Cell Genet. 1994;65(4):238-42 PubMed
Theor Appl Genet. 1993 Feb;85(6-7):665-72 PubMed
Mol Gen Genet. 1994 Apr;243(2):173-7 PubMed
Theor Appl Genet. 1995 May;90(6):797-802 PubMed
Cytogenet Cell Genet. 1992;61(3):221-3 PubMed
Chromosome Res. 1993 Jul;1(2):107-15 PubMed
Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PubMed
Genomics. 1993 Dec;18(3):553-8 PubMed
Genomics. 1994 Jul 1;22(1):101-7 PubMed
Methods Enzymol. 1993;218:357-62 PubMed
Mamm Genome. 1995 Sep;6(9):623-8 PubMed
Cytometry. 1990;11(1):208-18 PubMed
Plant J. 1993 Jun;3(6):883-6 PubMed
Nucleic Acids Res. 1992 Apr 25;20(8):1897-901 PubMed
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