Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) and species-specific PCR for identification of Bifidobacterium species
Jazyk angličtina Země Německo Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
16423654
DOI
10.1016/j.syapm.2005.07.003
PII: S0723-2020(05)00145-1
Knihovny.cz E-zdroje
- MeSH
- Bifidobacterium klasifikace genetika izolace a purifikace MeSH
- DNA bakterií chemie genetika MeSH
- druhová specificita MeSH
- fylogeneze MeSH
- lidé MeSH
- mezerníky ribozomální DNA chemie genetika MeSH
- polymerázová řetězová reakce metody MeSH
- polymorfismus délky restrikčních fragmentů * MeSH
- RNA ribozomální 16S chemie genetika MeSH
- RNA ribozomální 23S chemie genetika MeSH
- sekvence nukleotidů MeSH
- sekvenční seřazení MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- DNA bakterií MeSH
- mezerníky ribozomální DNA MeSH
- RNA ribozomální 16S MeSH
- RNA ribozomální 23S MeSH
Molecular biological methods based on genus-specific PCR, species-specific PCR, and amplified ribosomal DNA restriction analysis (ARDRA) of two PCR amplicons (523 and 914bp) using six restriction enzymes were used to differentiate among species of Bifidobacterium. The techniques were established using DNA from 16 type and reference strains of bifidobacteria of 11 species. The discrimination power of 914bp amplicon digestion was higher than that of 523bp amplicon digestion. The 914bp amplicon digestion by six restrictases provided unique patterns for nine species; B. catenulatum and B. pseudocatenulatum were not differentiated yet. The NciI digestion of the 914bp PCR product enabled to discriminate between each of B. animalis, B. lactis, and B. gallicum. The reference strain B. adolescentis CCM 3761 was reclassified as a member of the B. catenulatum/B. pseudocatenulatum group. The above-mentioned methods were applied for the identification of seven strains of Bifidobacterium spp. collected in the Culture Collection of Dairy Microorganisms (CCDM). The strains collected in CCDM were differentiated to the species level. Six strains were identified as B. lactis, one strain as B. adolescentis.
Citace poskytuje Crossref.org
RAPD and rep-PCR fingerprinting for characterization of Bifidobacterium species